Browse Element(s) Details


Os.51838.1.S1_at

Description gb:AK063988.1
DB_XREF= gi:32974006
TID=Os.51838.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51838 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033075P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-124-D12, full insert sequence.
FL= gb:AK063988.1 gb:AK099330.1 gb:AK099392.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2840011/11Alpha-amylase isozyme 3A precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51838.1.S1_at--901--6471Chr09:17289566..17289590 (25 bp)
GATAGGCTGGTATCCCGAGAAGGCC
LOC_Os09g28400
Os.51838.1.S1_at--56--8011Chr09:17289631..17289655 (25 bp)
GGATGTGGCCATTCCCGTCTGACAA
LOC_Os09g28400
Os.51838.1.S1_at--18--8971Chr09:17289650..17289674 (25 bp)
TGACAAGGTCATTCTGGGCTACGCC
LOC_Os09g28400
Os.51838.1.S1_at--1012--1811Chr09:17289688..17289802 (25 bp)
ACCCAGGAGTACCATGCATCTTCTA
LOC_Os09g28400
Os.51838.1.S1_at--177--1071Chr09:17289942..17289966 (25 bp)
AGGGTCATCACCAAGATCGGGCCGA
LOC_Os09g28400
Os.51838.1.S1_at--906--9211Chr09:17290000..17290024 (25 bp)
TCCACATCGTGGCTCATGGCAATGA
LOC_Os09g28400
Os.51838.1.S1_at--528--1451Chr09:17290039..17290063 (25 bp)
AGAAGAGCGGCCTTAGAGTCCCAGA
LOC_Os09g28400
Os.51838.1.S1_at--685--1031Chr09:17290070..17290094 (25 bp)
AGGTCGGCGCTAGAAACGGCTCGCA
LOC_Os09g28400
Os.51838.1.S1_at--60--5171Chr09:17290092..17290116 (25 bp)
GCAAGCTAGCTACACAGTTCTTAAT
LOC_Os09g28400
Os.51838.1.S1_at--718--2291Chr09:17290158..17290182 (25 bp)
AAATGTTCGTTTCTGTTTGCATATA
LOC_Os09g28400
Os.51838.1.S1_at--291--331Chr09:17290207..17290231 (25 bp)
ATACTGCTCTGTTTTCTATAGTTCA
LOC_Os09g28400
Target Sequence 
GATAGGCTGGTATCCCGAGAAGGCCGTCACCTTCGTCGACAACCACGACACCGGCTCGACGCAGCGGATGTGGCCATTCC
CGTCTGACAAGGTCATTCTGGGCTACGCCTACATCCTCACCCACCCAGGAGTACCATGCATCTTCTACGACCACGTGTTC
GACTGGAACCTCAAGCAAGAGATCAACGCGCTGGCGGCGACGAGGAAGCGCAACGGGATAAACGCCGGGAGCAAGCTGCG
CGTCCTGGCGGCGGAGAGCGACATGTACGTGGCGATGGTCGACGAGAGGGTCATCACCAAGATCGGGCCGAGAATAGACG
TGGGCAACATAATCCCGTCGGACTTCCACATCGTGGCTCATGGCAATGACTACTGCGTCTGGGAGAAGAGCGGCCTTAGA
GTCCCAGAACCAGAAGGTCGGCGCTAGAAACGGCTCGCAAGCTAGCTACACAGTTCTTAATAACTTGGTCGCAAAAAAAA
AAGTTCTTAATAATTTGTACGAGAAATGTTCGTTTCTGTTTGCATATATAGCTTATGAAATCTTACCAATATATACTGCT
CTGTTTTCTATAGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51838.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis