Browse Element(s) Details


Os.56215.1.S1_at

Description gb:AK109625.1
DB_XREF= gi:32994834
TID=Os.56215.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56215 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-138-B10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-138-B10, full insert sequence.
FL= gb:AK109625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2846010/11Xyloglucan fucosyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0009969biological_processxyloglucan biosynthesis
GO:0008417molecular_functionfucosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56215.1.S1_at--429--9791Chr09:17314952..17314976 (25 bp)
TAAGCAGGCACCCAACCAGAAGGCG
LOC_Os09g28460
Os.56215.1.S1_at--426--1311Chr09:17314920..17314944 (25 bp)
AGATGTTCCTCCAGAGCTACTGCGA
LOC_Os09g28460
Os.56215.1.S1_at--185--7031Chr09:17314837..17314861 (25 bp)
GTAAAGCCCTGGCTGTTGCTAACGC
LOC_Os09g28460
Os.56215.1.S1_at--553--10691Chr09:17314822..17314846 (25 bp)
TTGCTAACGCCCACGAATCGGACAG
LOC_Os09g28460
Os.56215.1.S1_at--11--5251Chr09:17314808..17314832 (25 bp)
GAATCGGACAGCGTCGGCTAACCCG
LOC_Os09g28460
Os.56215.1.S1_at--1074--4271Chr09:17314782..17314806 (25 bp)
CCTGCATCCAGACAACGTCGATGGA
LOC_Os09g28460
Os.56215.1.S1_at--1042--1771Chr09:17314739..17314763 (25 bp)
ACCGAGCTATGACTGCAGGGCCAAG
LOC_Os09g28460
Os.56215.1.S1_at--1144--1731Chr09:17314704..17314728 (25 bp)
ACCTTGGTGCCGTTCTAAGGCATGT
LOC_Os09g28460
Os.56215.1.S1_at--329--9771Chr09:17314689..17314713 (25 bp)
TAAGGCATGTCAGGCATTGCGAGGA
LOC_Os09g28460
Os.56215.1.S1_at--250--4071Chr09:17314670..17314694 (25 bp)
CGAGGATGTCGGTGATGGTCTAAAA
LOC_Os09g28460
Os.56215.1.S1_at--883--7071Chr09:17314511..17314535 (25 bp)
GTAATATGGCCTTCCAGTTGAAAGA
NONE
Target Sequence 
TAAGCAGGCACCCAACCAGAAGGCGCTGGTGGAGATGTTCCTCCAGAGCTACTGCGACGTGTCGGTGGTCAGCGGGCGGT
CGACGGTTGGGTACGTCGGCCATGGCCTCGCCGGGGTAAAGCCCTGGCTGTTGCTAACGCCCACGAATCGGACAGCGTCG
GCTAACCCGCCCTGCATCCAGACAACGTCGATGGAGCCGTGCTTCCATGCTCCACCGAGCTATGACTGCAGGGCCAAGAA
GGATGGGGACCTTGGTGCCGTTCTAAGGCATGTCAGGCATTGCGAGGATGTCGGTGATGGTCTAAAATTGTATGACTAGT
TAATTTTGATGTACTTAATCAGATGGGTGGAAAAGACAAGCTTCAATGATCAATTGATCAGTTGAAAGAAGAAAAAACTG
TAGAATAATTACAAGATGTATTGACTTAGATGGAGGCAAATGTAATATGGCCTTCCAGTTGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56215.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis