Browse Element(s) Details


Os.39991.1.A1_at

Description gb:CF318007
DB_XREF= gi:33689768
DB_XREF=HD--07-O15.g1
CLONE=HD--07-O15
TID=Os.39991.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=3
UG=Os.39991 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567714.1 (A.thaliana) alpha-amylase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2842011/11Alpha-amylase isozyme 3B precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0005576cellular_componentextracellular region
GO:0009507cellular_componentchloroplast
GO:0004556molecular_functionalpha-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39991.1.A1_at--132--6051Chr09:17296439..17296463 (25 bp)
GAGATCAGCACATTAGCTGCAGTGA
LOC_Os09g28420
Os.39991.1.A1_at--183--5591Chr09:17296470..17296494 (25 bp)
GAAATGAGATTCATCCCGGGAGCAA
LOC_Os09g28420
Os.39991.1.A1_at--83--3031Chr09:17296501..17296525 (25 bp)
AATCCTTGCTGCTGAGGGAGACGTC
LOC_Os09g28420
Os.39991.1.A1_at--838--5991Chr09:17296518..17296542 (25 bp)
GAGACGTCTATGTCGCCATGATCGA
LOC_Os09g28420
Os.39991.1.A1_at--251--1911Chr09:17296570..17296594 (25 bp)
ACGGTATGACGTGGGCAACTTAATC
LOC_Os09g28420
Os.39991.1.A1_at--716--2771Chr09:17296646..17296670 (25 bp)
AAGAGCGGTCTCAGAGTTCCTGCAG
LOC_Os09g28420
Os.39991.1.A1_at--771--7571Chr09:17296670..17296694 (25 bp)
GGGCGGCACCACTATTAGGCGAAGA
LOC_Os09g28420
Os.39991.1.A1_at--551--3131Chr09:17296696..17296720 (25 bp)
AATTTTTCAGGACTATTTGGTGCCT
LOC_Os09g28420
Os.39991.1.A1_at--611--6531Chr09:17296770..17296794 (25 bp)
GATTTCTTAATCTGAGCAAAGCGTT
LOC_Os09g28420
Os.39991.1.A1_at--1013--2671Chr09:17296788..17296812 (25 bp)
AAGCGTTGAGCATTGCTCCGATATT
LOC_Os09g28420
Os.39991.1.A1_at--800--191Chr09:17296810..17296834 (25 bp)
ATTTCTATGTATTCTACCTGCCTGG
LOC_Os09g28420
Target Sequence 
GAGATCAGCACATTAGCTGCAGTGAGATCAAGAAATGAGATTCATCCCGGGAGCAAGCTGAAAATCCTTGCTGCTGAGGG
AGACGTCTATGTCGCCATGATCGATGATAAGGTCATAACAAAGATTGGGACACGGTATGACGTGGGCAACTTAATCCCGT
CAGACTTCCATGTCGTTGCTCACGGCAACAATTACTGCATTTGGGAAAAGAGCGGTCTCAGAGTTCCTGCAGGGCGGCAC
CACTATTAGGCGAAGAAAATTTTTCAGGACTATTTGGTGCCTGGAATAAGATTTGAATTATATCCTAAATAACCAGATTA
TGATTGTATGAGATTTCTTAATCTGAGCAAAGCGTTGAGCATTGCTCCGATATTTCTATGTATTCTACCTGCCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39991.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis