Browse Element(s) Details


Os.55695.1.S1_at

Description gb:AK108581.1
DB_XREF= gi:32993790
TID=Os.55695.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55695 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-H08, full insert sequence.
FL= gb:AK108581.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2847011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28510Os.8862.1.S1_at11/119+17337536..17338144EF hand family protein, expressed
LOC_Os09g28510OsAffx.29608.3.S1_at1/119+17337536..17338144EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55695.1.S1_at--698--7591Chr09:17321951..17321975 (25 bp)
GGGAAACAATCTGACCGGACCAATT
LOC_Os09g28470
Os.55695.1.S1_at--3--6511Chr09:17321979..17322003 (25 bp)
GATATGAGCCTCCTACATCATTTGG
LOC_Os09g28470
Os.55695.1.S1_at--321--431Chr09:17321995..17322109 (25 bp)
ATCATTTGGTTTCTCTGCATCTGGA
LOC_Os09g28470
Os.55695.1.S1_at--632--7571Chr09:17322285..17322309 (25 bp)
GGGCGATTCCGATCAGCTTCAAGAA
LOC_Os09g28470
Os.55695.1.S1_at--520--7591Chr09:17322316..17322428 (25 bp)
GGGCTTCATGTTCCAATATGCACCT
LOC_Os09g28470
Os.55695.1.S1_at--445--10131Chr09:17322420..17322444 (25 bp)
TATGCACCTGGGAATAACCTTAGCT
LOC_Os09g28470
Os.55695.1.S1_at--911--3471Chr09:17322474..17322498 (25 bp)
CAGGTTGAGATCATCCGGTGTTCAT
LOC_Os09g28470
Os.55695.1.S1_at--100--9791Chr09:17322519..17322543 (25 bp)
TAACCGTTGACGACACGCTGGAACA
LOC_Os09g28470
Os.55695.1.S1_at--577--10351Chr09:17322583..17322607 (25 bp)
TTTTTGCCGTTCGATTCTATCCGTA
LOC_Os09g28470
Os.55695.1.S1_at--1066--9531Chr09:17322598..17322622 (25 bp)
TCTATCCGTATTTTTGTTCCTCCTT
LOC_Os09g28470
Os.55695.1.S1_at--856--2611Chr09:17322665..17322689 (25 bp)
AACCCTGCAACTGTGTGGTACCTGA
LOC_Os09g28470
Target Sequence 
GGGAAACAATCTGACCGGACCAATTCCAGATATGAGCCTCCTACATCATTTGGTTTCTCTGCATCTGGAGAACAACCGAC
TGACAGGGCAGATTCCTCCATCTCTAGGGAGCATGCCAAGGCTTCGTGAATTGTTTGTGCAGAACAATGCACTGCAAGGG
GCGATTCCGATCAGCTTCAAGAACAAAACGGGCTTCATGTTCCAATATGCACCTGGGAATAACCTTAGCTAACACAAATT
CAACGAGTATAAGCTTGTTCAGGTTGAGATCATCCGGTGTTCATGAGATGAAGAAAAGAGACATTAACCGTTGACGACAC
GCTGGAACACATTAATTAAACACCATTTTTTCCCTTTTATTTTGTTTCTTTTTGCCGTTCGATTCTATCCGTATTTTTGT
TCCTCCTTTCCTTTCTTTTTGGCAAACATGAGGTGATCCTGAATGTATTTAACCCTGCAACTGTGTGGTACCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55695.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis