Browse Element(s) Details


OsAffx.17946.1.S1_at

Description tigr:9637.m02509
TID=OsAffx.17946.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2845011/11paramyosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed
LOC_Os09g28500OsAffx.17948.1.S1_x_at11/119+17331813..17332130EF hand family protein
LOC_Os09g28500OsAffx.17948.1.S1_at11/119+17331813..17332130EF hand family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17946.1.S1_at--315--2991Chr09:17311047..17311071 (25 bp)
AATGTCACATTGTCACTTGAAGAGT
LOC_Os09g28450
OsAffx.17946.1.S1_at--334--7351Chr09:17311092..17311116 (25 bp)
GTGCAAGATGCCGAGGACTCTGCTA
LOC_Os09g28450
OsAffx.17946.1.S1_at--66--2931Chr09:17311301..17311325 (25 bp)
AAGGAGAGCCCATCATGAGAAACAA
LOC_Os09g28450
OsAffx.17946.1.S1_at--886--3091Chr09:17311329..17311353 (25 bp)
AATACTGGTGAGGTATCTCTTCCTA
LOC_Os09g28450
OsAffx.17946.1.S1_at--253--6911Chr09:17311341..17311365 (25 bp)
GTATCTCTTCCTATTGCTCAAATCT
LOC_Os09g28450
OsAffx.17946.1.S1_at--65--2091Chr09:17311380..17311404 (25 bp)
ACATCAACCTCTTTTGACGCAGTAG
LOC_Os09g28450
OsAffx.17946.1.S1_at--888--5791Chr09:17311395..17311419 (25 bp)
GACGCAGTAGGATCATCTAACTCCA
LOC_Os09g28450
OsAffx.17946.1.S1_at--1143--1171Chr09:17311429..17311453 (25 bp)
AGTATCGAATGTTGCTACCTAGAGC
LOC_Os09g28450
OsAffx.17946.1.S1_at--1086--5891Chr09:17311450..17311474 (25 bp)
GAGCTGACACTATAGCAACTACAAT
LOC_Os09g28450
OsAffx.17946.1.S1_at--454--6091Chr09:17311479..17311503 (25 bp)
GAGTCAAGGCCACGGAAGTCTTTCT
LOC_Os09g28450
OsAffx.17946.1.S1_at--404--10651Chr09:17311503..17311527 (25 bp)
TTCCCACGGTCCTTAGTGGCAATGT
LOC_Os09g28450
Target Sequence 
AATGTCACATTGTCACTTGAAGAGTACAATGTATTGTGCAAGAAAGTGCAAGATGCCGAGGACTCTGCTAAGAAGCAAGT
TATTAGAGCTATAGAGAAGATCAAGAAAGCAAAGGATGCAGAGGTGAGGAGTTTGGATAGGTTAGATCAACTGATCAAGC
AAATTGATGATAGGAGGGTTGCACTGAGAGAGGCTCATGAGAAAGCCAATGTAGCATGTGATGGAAAATTAGCAATGGAG
AATGAACTAAGAAAAAGGAGAGCCCATCATGAGAAACAACGAAATACTGGTGAGGTATCTCTTCCTATTGCTCAAATCTC
CAATGTAAAGAACACATCAACCTCTTTTGACGCAGTAGGATCATCTAACTCCAATCCTTATAAGTATCGAATGTTGCTAC
CTAGAGCTGACACTATAGCAACTACAATAGCTGAGTCAAGGCCACGGAAGTCTTTCTTCCCACGGTCCTTAGTGGCAATG
T

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17946.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis