Browse Element(s) Details


Os.52451.1.A1_at

Description gb:AK067195.1
DB_XREF= gi:32977213
TID=Os.52451.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098P10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098P10, full insert sequence.
FL= gb:AK067195.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2844011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g28400Os.51838.1.S1_at11/119+17287992..17290251Alpha-amylase isozyme 3A precursor, putative, expressed
LOC_Os09g28410OsAffx.5986.1.S1_at11/119+17292832..17294528hypothetical protein
LOC_Os09g28420Os.39991.1.A1_at11/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28420Os.33211.1.S1_at1/119+17295165..17296881Alpha-amylase isozyme 3B precursor, putative, expressed
LOC_Os09g28430Os.33211.1.S1_at10/119+17302318..17304046Alpha-amylase isozyme 3C precursor, putative, expressed
LOC_Os09g28440Os.52451.1.A1_at11/119+17305099..17306198AP2 domain containing protein, expressed
LOC_Os09g28450OsAffx.17946.1.S1_at11/119+17308965..17311559paramyosin, putative, expressed
LOC_Os09g28460Os.56215.1.S1_at10/119+17314529..17316449Xyloglucan fucosyltransferase family protein, expressed
LOC_Os09g28470Os.55695.1.S1_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470Os.51626.1.S2_at11/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28470OsAffx.6892.1.S1_x_at2/119+17318981..17322722Leucine Rich Repeat family protein, expressed
LOC_Os09g28480Os.23146.1.S1_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_s_at11/119+17323456..17326375expressed protein
LOC_Os09g28480Os.52947.1.S1_x_at10/119+17323456..17326375expressed protein
LOC_Os09g28490NANA9+17326663..17327220EF hand family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0006950biological_processresponse to stress
GO:0008219biological_processcell death
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009723biological_processresponse to ethylene stimulus
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52451.1.A1_at--1078--10671Chr09:17305732..17305756 (25 bp)
TTGCCCATGCCCAGCCAAAGAAACG
LOC_Os09g28440
Os.52451.1.A1_at--716--1931Chr09:17305792..17305816 (25 bp)
ACGGCAGAGCAGATGACTCCGACTC
LOC_Os09g28440
Os.52451.1.A1_at--730--5051Chr09:17305889..17305913 (25 bp)
GCAGCAACCAGCTCTGGGATGGCTT
LOC_Os09g28440
Os.52451.1.A1_at--164--8571Chr09:17305931..17305955 (25 bp)
TGGATGAAGCGGACACCTGGTTCCC
LOC_Os09g28440
Os.52451.1.A1_at--120--9291Chr09:17305963..17305987 (25 bp)
TCCGGTGCAGCGTCTAGTTTTTGAG
LOC_Os09g28440
Os.52451.1.A1_at--1057--7411Chr09:17305991..17306015 (25 bp)
GTGTTATTAGATCTCAACCGTTGGA
LOC_Os09g28440
Os.52451.1.A1_at--541--3251Chr09:17306005..17306029 (25 bp)
CAACCGTTGGATTAGATTACTGGAA
LOC_Os09g28440
Os.52451.1.A1_at--155--2951Chr09:17306028..17306052 (25 bp)
AAGGCCATTCATTTATTCGTTTCAT
LOC_Os09g28440
Os.52451.1.A1_at--361--10011Chr09:17306065..17306089 (25 bp)
TAGCTATACTTCATTGTTTGTGCAG
LOC_Os09g28440
Os.52451.1.A1_at--587--5031Chr09:17306086..17306110 (25 bp)
GCAGAGCACGTTTTTTAGGAGTACC
LOC_Os09g28440
Os.52451.1.A1_at--701--971Chr09:17306102..17306126 (25 bp)
AGGAGTACCGTCTTATACATATTTT
LOC_Os09g28440
Target Sequence 
TTGCCCATGCCCAGCCAAAGAAACGGCAATGGCGGCGATGCTGTCACGGCGGCGACGACAACGGCAGAGCAGATGACTCC
GACTCTGTCGCCGTGCAGCGCGGATGCCGAGGAGACGACGACGCCGGTGGATTGGCAGATGGGCGCGGACGAAGCCGGCA
GCAACCAGCTCTGGGATGGCTTGCAGGACCTGATGAAGCTGGATGAAGCGGACACCTGGTTCCCGCCATTTTCCGGTGCA
GCGTCTAGTTTTTGAGCTAGTGTTATTAGATCTCAACCGTTGGATTAGATTACTGGAAGGCCATTCATTTATTCGTTTCA
TTGTATAGCTAATTAGCTATACTTCATTGTTTGTGCAGAGCACGTTTTTTAGGAGTACCGTCTTATACATATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52451.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis