Browse Element(s) Details


Os.57007.1.S1_at

Description gb:AK110734.1
DB_XREF= gi:32995943
TID=Os.57007.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57007 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-F01, full insert sequence.
FL= gb:AK110734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5544011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55390OsAffx.26613.1.S1_at11/114+32729389..32730994hypothetical protein
LOC_Os04g55400OsAffx.14427.1.S1_at11/114+32733278..32734131hypothetical protein
LOC_Os04g55410Os.17903.1.S1_at11/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.54646.1.S1_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55410Os.28089.1.S2_at1/114+32736641..32740875Glycerol kinase, putative, expressed
LOC_Os04g55420Os.52699.1.S1_at11/114+32744512..32747933Leucine Rich Repeat family protein, expressed
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57007.1.S1_at--494--5571Chr04:32758031..32758055 (25 bp)
GAAAGAGGCTTCAGCTTCCGTACTA
LOC_Os04g55440
Os.57007.1.S1_at--288--771Chr04:32758097..32758121 (25 bp)
ATGTCTGGCATCGACTTATCTGCAA
LOC_Os04g55440
Os.57007.1.S1_at--547--7631Chr04:32758162..32758186 (25 bp)
GGGACATATCAAGGCCCTCAATCTG
LOC_Os04g55440
Os.57007.1.S1_at--489--9851Chr04:32758190..32758214 (25 bp)
TACAATTTCTTTGCCGGACCAATCC
LOC_Os04g55440
Os.57007.1.S1_at--625--8951Chr04:32758243..32758267 (25 bp)
TGAAAGCTTAGACCTATCCCACAAC
LOC_Os04g55440
Os.57007.1.S1_at--396--3891Chr04:32758313..32758337 (25 bp)
CTGTCCGTGTTCTCAGTGATGTACA
LOC_Os04g55440
Os.57007.1.S1_at--477--8571Chr04:32758366..32758390 (25 bp)
TGGTCAGTTCGGCTCATTTGATATG
LOC_Os04g55440
Os.57007.1.S1_at--859--6731Chr04:32758452..32758476 (25 bp)
GTTCAGGTCATTCGCTACCGGATGA
LOC_Os04g55440
Os.57007.1.S1_at--107--2291Chr04:32758492..32758516 (25 bp)
AAATGATCCAATCCTTTACGCGGTC
LOC_Os04g55440
Os.57007.1.S1_at--418--9111Chr04:32758519..32758543 (25 bp)
TGCTGCCTCGTTCGTAGTGACATTT
LOC_Os04g55440
Os.57007.1.S1_at--7--151Chr04:32758547..32758571 (25 bp)
ATTACTTTCGCATTCACAAGCTTCC
LOC_Os04g55440
Target Sequence 
GAAAGAGGCTTCAGCTTCCGTACTAAAGGCNACNTTTACNTANACAAACACAATTTCATCAATTGGATGTCTGGCATCGA
CTTATCTGCAAACATGTTGTCTGGACAAATTCCCAGGGAGTTGGGAAATCTGGGACATATCAAGGCCCTCAATCTGTCCT
ACAATTTCTTTGCCGGACCAATCCCAGCAACCTTTGCAAGCATGAGTTCAGTTGAAAGCTTAGACCTATCCCACAACAAG
CTGAGTGGAGCAATACCATGGCAGTTAACTCGTTTGNTCATNCACTGTCCGTGTTCTCAGTGATGTACAACAACTTATCA
GGATGTATACCAAACTCTGGTCAGTTCGGCTCATTTGATATGGATAGCTACCAAGGAAACAACCTCCTACACCCAGCGTC
AGAAGGGAGCGAGTGTGCTCCCAGTTCAGGTCATTCGCTACCGGATGATGGAGATGGAAAGGGAAATGATCCAATCCTTT
ACGCGGTCACTGCTGCCTCGTTCGTAGTGACATTTTGGATTACTTTCGCATTCACAAGCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57007.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis