Browse Element(s) Details


Os.57039.1.S1_at

Description gb:AK110793.1
DB_XREF= gi:32996002
TID=Os.57039.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57039 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-D03, full insert sequence.
FL= gb:AK110793.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0434011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04310NANA7+1901420..1903881hypothetical protein
LOC_Os07g04320OsAffx.28261.1.S1_at11/117+1904633..1905040hypothetical protein
LOC_Os07g04330Os.11006.1.S1_at10/117+1910380..1912548expressed protein
LOC_Os07g04330Os.38152.1.S1_at1/117+1910380..1912548expressed protein
LOC_Os07g04340Os.57039.1.S1_at11/117+1924015..1925341expressed protein
LOC_Os07g04350Os.40384.1.S1_at11/117+1926814..1928720expressed protein
LOC_Os07g04350OsAffx.5206.1.S1_s_at11/117+1926814..1928720expressed protein
LOC_Os07g04360Os.41695.4.S1_x_at2/117+1929721..1933659Transposable element protein, putative, MuDR
LOC_Os07g04370OsAffx.16079.1.S1_at11/117+1936167..1937694hypothetical protein
LOC_Os07g04380NANA7+1941686..1943505hypothetical protein
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57039.1.S1_at--89--9471Chr07:1924743..1924767 (25 bp)
TCTGTGTTTTTGTTCTGGCTGCAGT
LOC_Os07g04340
Os.57039.1.S1_at--340--6611Chr07:1924780..1924804 (25 bp)
GATTGGATTCTTTGACTACGCGCTC
LOC_Os07g04340
Os.57039.1.S1_at--565--1951Chr07:1924820..1924844 (25 bp)
ACTGTGGTCAACTTCCTCAATGGAA
LOC_Os07g04340
Os.57039.1.S1_at--1060--8091Chr07:1924959..1924983 (25 bp)
GGACCGAATCAATGGGCTGCCTGAT
LOC_Os07g04340
Os.57039.1.S1_at--7--7631Chr07:1925010..1925034 (25 bp)
GGGACTCCTGGTTCCGCACAAAGGA
LOC_Os07g04340
Os.57039.1.S1_at--663--7911Chr07:1925059..1925083 (25 bp)
GGTTGCTACTCCAAGCGCCAAGTAG
LOC_Os07g04340
Os.57039.1.S1_at--871--9591Chr07:1925102..1925126 (25 bp)
TCATTGCCTGAGTACTAGCTAGTGT
LOC_Os07g04340
Os.57039.1.S1_at--21--7511Chr07:1925150..1925174 (25 bp)
GTGGAGTTTAGTACCTGTTATCTTC
LOC_Os07g04340
Os.57039.1.S1_at--303--8791Chr07:1925165..1925189 (25 bp)
TGTTATCTTCATTCCCTAGCAGTAA
LOC_Os07g04340
Os.57039.1.S1_at--462--7071Chr07:1925290..1925314 (25 bp)
GTAATGATCATCCTGCTAGCTCTAT
LOC_Os07g04340
Os.57039.1.S1_at--221--1591Chr07:1925307..1925331 (25 bp)
AGCTCTATGGCAATCTACTACAGTA
LOC_Os07g04340
Target Sequence 
TCTGTGTTTTTGTTCTGGCTGCAGTCTCCATTCTGGTGATTGGATTCTTTGACTACGCGCTCACAGTTGGGGAGATGACT
GTGGTCAACTTCCTCAATGGAAAAGAGTTCAAGGCTGTCAAAACCGACTTCATGGATGAAGCCGAAGCCACACTTCTCGA
TCTCGCCCAACAGGAGAGGGTTCGAGAGGTGAGGAACCGGTACGTGCAGGAGGCATGGACCGAATCAATGGGCTGCCTGA
TCAGGGCCCTCACCCTCAAGTCCTACCGGGACTCCTGGTTCCGCACAAAGGAGGAGGACTCCAACAACAGCACCACGGTT
GCTACTCCAAGCGCCAAGTAGAGATCCACATATATCACATCATTGCCTGAGTACTAGCTAGTGTCTAGAGTATTAGTATC
TTTACTTGTGGAGTTTAGTACCTGTTATCTTCATTCCCTAGCAGTAACAATTTCCATGATTAGTACTAGTAATATGTAAT
GTTGCAAGATGGATGAGACTATGCAGCACCATTGGTTGTAACCCACACCAATGCTTCCTAGGAGTATGTAATGATCATCC
TGCTAGCTCTATGGCAATCTACTACAGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57039.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis