Browse Element(s) Details


Os.57082.1.S1_at

Description gb:AK110882.1
DB_XREF= gi:32996091
TID=Os.57082.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57082 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G10, full insert sequence.
FL= gb:AK110882.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4117011/11oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os01g592304/11retrotransposon protein, putative, unclassified
LOC_Os03g307301/11retrotransposon protein, putative, unclassified
LOC_Os04g282201/11hypothetical protein
LOC_Os02g302701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41130OsAffx.18596.1.S1_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41130OsAffx.18596.1.S1_x_at11/1110+21769936..21770869AP2 domain containing protein, expressed
LOC_Os10g41150Os.19725.1.S1_x_at10/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.14940.1.S1_at9/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41150Os.25227.1.S1_x_at1/1110+21775681..21779426aminotransferase, classes I and II family protein, expressed
LOC_Os10g41160Os.16083.1.S1_at11/1110+21782610..21784063expressed protein
LOC_Os10g41170Os.57082.1.S1_at11/1110+21787466..21790532oxidoreductase, zinc-binding dehydrogenase family protein, expressed
LOC_Os10g41180Os.46183.1.S1_at10/1110+21792111..21794280expressed protein
LOC_Os10g41190Os.26817.1.S1_at11/1110+21794588..21798099Hexose carrier protein HEX6, putative, expressed
LOC_Os10g41200Os.9166.1.S1_a_at11/1110+21798750..21801974ZmMybst1, putative, expressed
LOC_Os10g41210Os.9166.4.S1_x_at10/1110+21803800..21807068NA
LOC_Os10g41220Os.46463.1.S1_at11/1110+21807268..21812044U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0030154biological_processcell differentiation
GO:0005739cellular_componentmitochondrion
GO:0008270molecular_functionzinc ion binding
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57082.1.S1_at--367--4991Chr10:21789935..21789959 (25 bp)
GCATGATCTCTTATGGGCAATGTTC
LOC_Os10g41170
Os.57082.1.S1_at--434--4471Chr10:21789966..21789990 (25 bp)
GCCTGACCCTGTACCAGTGAGTGAT
LOC_Os10g41170
Os.57082.1.S1_at--356--1111Chr10:21789981..21790005 (25 bp)
AGTGAGTGATCTGGCGTCCAAGTCC
LOC_Os10g41170
Os.57082.1.S1_at--240--2851Chr10:21790000..21790024 (25 bp)
AAGTCCCTGATCTTGGGCAGGCCAG
LOC_Os10g41170
Os.57082.1.S1_at--536--3351Chr10:21790156..21790180 (25 bp)
CACGCGGATCTCGAGGCACGGAGAA
LOC_Os10g41170
Os.57082.1.S1_at--817--7411Chr10:21790195..21790219 (25 bp)
GTGTTGTTGCCTGCCATGCCAGCAG
LOC_Os10g41170
Os.57082.1.S1_at--477--4751Chr10:21790226..21790250 (25 bp)
GCTGATGAGAGTATCCTGTGGCATT
LOC_Os10g41170
Os.57082.1.S1_at--1092--1338Chr10:21790338..21790362 (25 bp)
AGAGTCAAACTCTGTAACCCGGCAT
LOC_Os10g41170
Os.57082.1.S1_at--213--98121Chr10:21790352..21790376 (25 bp)
TAACCCGGCATCTCTCTTAAATAGA
LOC_Os10g41170
Os.57082.1.S1_at--919--75935Chr12:19275632..19275656 (25 bp)
GGGCACCACAATGTAACCATGGCGA
NONE
Os.57082.1.S1_at--161--20135Chr12:18578651..18578675 (25 bp)
ACTCGTAGCGGCTAGGAGCTATATT
NONE
Target Sequence 
GCATGATCTCTTATGGGCAATGTTCAGGGAGGCCTGACCCTGTACCAGTGAGTGATCTGGCGTCCAAGTCCCTGATCTTG
GGCAGGCCAGGGATGAGGCACTACACCGCCACCCGCGACGAGCTGCTGCACGCCGCCGGCGAGGTCTTCGCCGGCGTGGC
GGCTGGCGTTCTGCGCGTCCGCGTCAACCATGTCTACCCGCTGCATGAGGCGGCTCGCGCGCACGCGGATCTCGAGGCAC
GGAGAACCTCTGGATCTGTGGTGTTGTTGCCTGCCATGCCAGCAGCTGACAGCTGATGAGAGTATCCTGTGGCATTGATG
TTGTTAGAATAGGTGTCGAATATACTAGTTCTATTTGGTTACAGTTGGACTTGGAATTGTAATAGGTGTTAGGGGGTGGA
GTTAGAGTCAAACTCTGTAACCCGGCATCTCTCTTAAATAGAGCGGGGGGCACCACAATGTAACCATGGCGACTACAATG
TAGCGTAGACACGCAGGGAGATGATGGCGGCGTGGCCATGGACTCGTAGCGGCTAGGAGCTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57082.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis