Browse Element(s) Details


Os.57083.1.S1_x_at

Description gb:AK110883.1
DB_XREF= gi:32996092
TID=Os.57083.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57083 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-G11, full insert sequence.
FL= gb:AK110883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0972010/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g09690Os.37238.1.S1_at10/118+5591210..5594767CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os08g09700OsAffx.29122.1.S1_at11/118+5596338..5600722F-box domain containing protein
LOC_Os08g09710Os.56260.1.S1_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09710Os.56260.1.S1_x_at11/118+5602906..5605993F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_x_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720OsAffx.29123.1.S1_at11/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09720Os.57083.1.S1_x_at10/118+5612197..5615209F-box domain containing protein, expressed
LOC_Os08g09730Os.54840.1.S1_at11/118+5617319..5620279F-box domain containing protein, expressed
LOC_Os08g09740Os.51875.1.S1_at10/118+5622786..5626083F-box domain containing protein, expressed
LOC_Os08g09750Os.52859.1.S1_at11/118+5627002..5629876F-box domain containing protein, expressed
LOC_Os08g09760Os.18985.1.S1_at11/118+5631925..5636857F-box domain containing protein, expressed
LOC_Os08g09770Os.54759.1.S1_at2/118+5639419..5641449Luminal binding protein 5 precursor, putative
LOC_Os08g09770OsAffx.24785.1.S1_x_at1/118+5639419..5641449Luminal binding protein 5 precursor, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57083.1.S1_x_at--22--8591Chr08:5613476..5613500 (25 bp)
TGGTATTCCCATTCCCAGTGATGAA
LOC_Os08g09720
Os.57083.1.S1_x_at--1090--7751Chr08:5613543..5613567 (25 bp)
GGTGATCATATGCTTGACCACTTGT
LOC_Os08g09720
Os.57083.1.S1_x_at--342--5851Chr08:5613558..5613582 (25 bp)
GACCACTTGTCAGATGTTAGAACTT
LOC_Os08g09720
Os.57083.1.S1_x_at--99--5431Chr08:5613577..5613601 (25 bp)
GAACTTTGGGTCTGTTAGGCCATCA
LOC_Os08g09720
Os.57083.1.S1_x_at--995--4431NONE
GCCATCAAGGAGAGGACATCCACAG
NONE
Os.57083.1.S1_x_at--359--2611Chr08:5614769..5614793 (25 bp)
AACCCAACGGGAGGATCATTTGCTT
LOC_Os08g09720
Os.57083.1.S1_x_at--422--611Chr08:5614850..5614874 (25 bp)
ATGCTGGCAAAATTCCTCCAACGTA
LOC_Os08g09720
Os.57083.1.S1_x_at--830--2571Chr08:5614874..5614898 (25 bp)
AACGGCATATCGCTTCAGAAGATTT
LOC_Os08g09720
Os.57083.1.S1_x_at--868--10451Chr08:5615053..5615077 (25 bp)
TTAAAATGCTGAAAACCGGTATGGA
LOC_Os08g09720
Os.57083.1.S1_x_at--270--7931Chr08:5615121..5615145 (25 bp)
GGATTGTCTACTGAATGTGTAACTA
LOC_Os08g09720
Os.57083.1.S1_x_at--918--651Chr08:5615147..5615171 (25 bp)
ATGCACAGTGTTAGTACAGTTACCT
LOC_Os08g09720
Target Sequence 
TGGTATTCCCATTCCCAGTGATGAATATGGCGGAAACTATGGGAACCATGATTATACTATTTTCGGTGGTGATCATATGC
TTGACCACTTGTCAGATGTTAGAACTTTGGGTCTGTTAGGCCATCAAGGAGAGGACATCCACAGAAGCAGAGGGGGCATC
AACCCAACGGGAGGATCATTTGCTTGCAACAACCTGAAGAAGGTTAAGATCACATGCCGTAAAGATGATGTAATGGTCCA
TATGCTGGCAAAATTCCTCCAACGTAACGGCATATCGCTTCAGAAGATTTTTGTTCGTCGCACTTCCAGCACTCATAATG
GCGAGGAAGGCACGGGCAAGGACTCCAGTGCAAAACGGAAGGCGCAAGACGAAGCTGCGAGGCGAGCAGTGAAACAGCTG
AGGAGGGCACGAAACAGTAGAAGCCCAGAGTGAGGGAAAGGTGTTTAAAATGCTGAAAACCGGTATGGATGTTGAGGAAT
CCAGTGCTGAGTTTACATTGCAGTTAACAGTAGGATTGTCTACTGAATGTGTAACTATATGCACAGTGTTAGTACAGTTA
CCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57083.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis