Browse Element(s) Details


Os.57090.1.S1_at

Description gb:AK110898.1
DB_XREF= gi:32996107
TID=Os.57090.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57090 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-A08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-A08, full insert sequence.
FL= gb:AK110898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1812011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18080Os.9593.1.S1_at10/113+10069246..10076848Transmembrane protein G5p, putative, expressed
LOC_Os03g18090NANA3+10079572..10079991hypothetical protein
LOC_Os03g18100OsAffx.12909.1.S1_at11/113+10081065..10081754hypothetical protein
LOC_Os03g18110Os.51761.1.S1_at11/113+10085032..10087065expressed protein
LOC_Os03g18120Os.57090.1.S1_at11/113+10095270..10099971expressed protein
LOC_Os03g18120OsAffx.27522.1.S1_x_at2/113+10095270..10099971expressed protein
LOC_Os03g18130Os.11327.1.S1_at11/113+10098996..10103435Asparagine synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57090.1.S1_at--128--9231Chr03:10098803..10098916 (25 bp)
TCCACCACGCACATGAGGAGCGAGG
LOC_Os03g18120
Os.57090.1.S1_at--649--2911Chr03:10098929..10098953 (25 bp)
AAGGAGGAATCAGGTGCTACAACGA
LOC_Os03g18120
Os.57090.1.S1_at--884--9071Chr03:10098943..10098967 (25 bp)
TGCTACAACGAGACGTGGCCGATCA
LOC_Os03g18120
Os.57090.1.S1_at--687--5071Chr03:10098986..10099010 (25 bp)
GCAGCGGCTCCGACCGTCGGATGAT
LOC_Os03g18120
Os.57090.1.S1_at--768--971Chr03:10099145..10099169 (25 bp)
AGGAGAAGACCGATCCGCAGCGCTA
LOC_Os03g18120
Os.57090.1.S1_at--1098--7271Chr03:10099201..10099225 (25 bp)
GTGCCGGACACATGGAACCGACTCC
LOC_Os03g18120
Os.57090.1.S1_at--891--2831Chr03:10099263..10099287 (25 bp)
AAGTCACAAGCACGCAACGCAACGC
LOC_Os03g18120
Os.57090.1.S1_at--1042--2591Chr03:10099283..10099307 (25 bp)
AACGCAAGCCCACTAGTGACTAGTG
LOC_Os03g18120
Os.57090.1.S1_at--596--2031Chr03:10099301..10099325 (25 bp)
ACTAGTGGTAGCAGCTAGCGGACAA
LOC_Os03g18120
Os.57090.1.S1_at--1000--2071Chr03:10099366..10099390 (25 bp)
AATTACGGTGTATCGTTTCAAGGAT
LOC_Os03g18120
Os.57090.1.S1_at--234--6051Chr03:10099391..10099415 (25 bp)
GAGTTCGGATGAGTGATCGATCACT
LOC_Os03g18120
Target Sequence 
TCCACCACGCACATGAGGAGCGAGGACTGGGGAAGGGAAGGAGGAATCAGGTGCTACAACGAGACGTGGCCGATCACGCA
GCGGGGCTACCGAGGCAGCGGCTCCGACCGTCGGATGATGGAGGTGATGTCCGACGTNCTGGGCAGGATGAGGACCCCCG
TCACGCTGCTCAACATCACCCAGCTCACGGAGCACCGCGTCGACGCCCNACGTCTCCGTCTACACCGAGACCGGCGGNNN
NCTCNGTCACCGACGAGGAGAAGACCGATCCGCAGCGCTACACCGACTGCATCCACTGGTGCANTCNCCGGCGTGCCGGA
CACATGGAACCGACTCCTCTACGCCCACTTGTAGCNNNNNCTCTCGGCTCTCACAAGTCACAAGCACGCAACGCAACGCA
AGCCCACTAGTGACTAGTGGTAGCAGCTAGCGGACAAAGGATACGGATAATGACAGCGAAAAATGAGGAGATATATTAAT
TACGGTGTATCGTTTCAAGGATGAGTTCGGATGAGTGATCGATCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57090.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis