Browse Element(s) Details


Os.57108.1.S1_at

Description gb:AK110931.1
DB_XREF= gi:32996140
TID=Os.57108.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F10, full insert sequence.
FL= gb:AK110931.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2433011/11expressed protein
LOC_Os04g269702/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24300OsAffx.18568.1.S1_at1/1112+13857953..13860736retrotransposon protein, putative, unclassified
LOC_Os12g24310OsAffx.19798.1.S1_at11/1112+13872519..13873557hypothetical protein
LOC_Os12g24320Os.51787.1.S1_at11/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320Os.48426.1.A1_at5/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.25760.1.S1_x_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24320OsAffx.31219.1.S1_at1/1112+13876533..13878812Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os12g24330Os.57108.1.S1_at11/1112+13882818..13885562expressed protein
LOC_Os12g24340OsAffx.31862.1.S1_at11/1112+13888337..13889009hypothetical protein
LOC_Os12g24350OsAffx.19799.1.S1_at11/1112+13889667..13890262hypothetical protein
LOC_Os12g24364Os.45173.1.S1_x_at3/1112+13892665..13899322retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24380OsAffx.31863.1.S1_at11/1112+13902675..13903589hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57108.1.S1_at--34--9151Chr12:13883390..13883414 (25 bp)
TGCGTGACACCACGGACATGGCCAA
LOC_Os12g24330
Os.57108.1.S1_at--673--2491Chr12:13883364..13883388 (25 bp)
AACAGGGACATCCAGGAGTTCCACC
LOC_Os12g24330
Os.57108.1.S1_at--754--8191Chr12:13883258..13883282 (25 bp)
GGAAGATGCTGGAGAGCCTGCCCAA
LOC_Os12g24330
Os.57108.1.S1_at--906--3511Chr12:13883158..13883182 (25 bp)
CATCCAAAAGCGGTGCTGCTGAAGG
LOC_Os12g24330
Os.57108.1.S1_at--989--6271Chr12:13883128..13883152 (25 bp)
GATGATCAGGCTATTGACGTTGTTA
LOC_Os12g24330
Os.57108.1.S1_at--423--5771Chr12:13883113..13883137 (25 bp)
GACGTTGTTACTTCAGCTGTGGCCC
LOC_Os12g24330
Os.57108.1.S1_at--718--3212Chr12:13883088..13883112 (25 bp)
CAAGGTGTTCCAGACTGTGGCTTTT
LOC_Os12g24330
Os.57108.1.S1_at--925--7531Chr12:13883072..13883096 (25 bp)
GTGGCTTTTGCAACGGCTGGATGAA
LOC_Os12g24330
Os.57108.1.S1_at--496--10272Chr12:13883038..13883062 (25 bp)
TTTGAGTTTGTTATGCGTGCACGAG
LOC_Os12g24330
Os.57108.1.S1_at--713--10271Chr12:13882954..13882978 (25 bp)
TTTGCGCGGCGTTGAATCCAGGAGT
LOC_Os12g24330
Os.57108.1.S1_at--22--4631Chr12:13882911..13882935 (25 bp)
GCGATTTGAGCCTAGGATTCCTTTT
LOC_Os12g24330
Target Sequence 
TGCGTGACACCACGGACATGGCCAAGAACAGGGACATCCAGGAGTTCCACCGCATCACGCACAGCCGCTACGAGTACTCC
ACGCCGACATGGACCGGCATTGCCGACGACGAGGAGGACCCCAACGCCAAGTGGAAGATGCTGGAGAGCCTGCCCAACTT
CACGCCGTGGTGCCCGTACGCGCGCGGCGAAGCCGGCGAGAAAGAGGGTTGGCACATGACCGGACACCTCACCATCCAAA
AGCGGTGCTGCTGAAGGAAGCTGATGATCAGGCTATTGACGTTGTTACTTCAGCTGTGGCCCCAAGGTGTTCCAGACTGT
GGCTTTTGCAACGGCTGGATGAATAAGTCAGTTTTGAGTTTGTTATGCGTGCACGAGAGATGTGGCGAGCTGCAGGAGTT
GGCGACCGCGTCAGGTCGTGCGTTGTGGGCGTGAGTTTTGCGCGGCGTTGAATCCAGGAGTTCCGGATCGTGGGATGGCG
CGATTTGAGCCTAGGATTCCTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis