Browse Element(s) Details


Os.57125.1.S1_at

Description gb:AK110963.1
DB_XREF= gi:32996172
TID=Os.57125.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-B02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-B02, full insert sequence.
FL= gb:AK110963.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1941010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g19370Os.45173.1.S1_x_at6/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19370Os.38764.1.S1_x_at1/117+11459297..11466054retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g19379OsAffx.28522.1.S1_at5/117+11469227..11469625NA
LOC_Os07g19390OsAffx.28522.1.S1_at1/117+11471598..11472551hypothetical protein
LOC_Os07g19400Os.24579.1.S1_at11/117+11477902..11480201pentatricopeptide, putative, expressed
LOC_Os07g19410Os.57125.1.S1_at10/117+11484120..11485507expressed protein
LOC_Os07g19420NANA7+11487286..11488683retrotransposon protein, putative, unclassified
LOC_Os07g19430NANA7+11489718..11490392retrotransposon protein, putative, unclassified
LOC_Os07g19444Os.25544.1.S1_at11/117+11495187..11503496regulatory protein, putative, expressed
LOC_Os07g19460Os.24751.1.S1_at8/117+11503911..11507933Mitochondrial carrier protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57125.1.S1_at--1008--6211Chr07:11484578..11484602 (25 bp)
GAGGCGCTGCTTGGGTGCCTATACA
LOC_Os07g19410
Os.57125.1.S1_at--293--8551Chr07:11484488..11484512 (25 bp)
TGGAGACGTCATCTAGGTGGCCTTC
LOC_Os07g19410
Os.57125.1.S1_at--730--2371Chr07:11484457..11484481 (25 bp)
AAACCTCTCTCGGACAACTTGCATG
LOC_Os07g19410
Os.57125.1.S1_at--865--4991Chr07:11484437..11484461 (25 bp)
GCATGTGCTCACTCTAGATGTTTGT
LOC_Os07g19410
Os.57125.1.S1_at--1113--6271Chr07:11484421..11484445 (25 bp)
GATGTTTGTATTCTTGCGGCAGCGC
LOC_Os07g19410
Os.57125.1.S1_at--924--7451Chr07:11484359..11484381 (23 bp)
GTGGGAAAGTGGTTCCATCCTTCTT
LOC_Os07g19410
Os.57125.1.S1_at--903--6491Chr07:11484301..11484325 (25 bp)
GATAGAGTTGAGTGCAGTGCCCGCT
LOC_Os07g19410
Os.57125.1.S1_at--185--9531Chr07:11484231..11484255 (25 bp)
TCTAGTGGTGGCCAATCACGCTTAG
LOC_Os07g19410
Os.57125.1.S1_at--277--9991Chr07:11484209..11484233 (25 bp)
TAGCGACGGCCGATTCAATGTTAGC
LOC_Os07g19410
Os.57125.1.S1_at--529--1691Chr07:11484187..11484211 (25 bp)
AGCCTTCTCCTGGATTCTGTATAGG
LOC_Os07g19410
Os.57125.1.S1_at--486--9911Chr07:11484120..11484144 (25 bp)
TACTGCCTCTCAAGGTCTTAGCTTT
NONE
Target Sequence 
GAGGCGCTGCTTGGGTGCCTATACAGTGCCCAGGCGGTTCTTCGTGACCTCTACGGACGGCTGCGTCAGTGTCATCGTCG
CTTTTCTCCCTGGAGACGTCATCTAGGTGGCCTTCCTGCCAAAACCTCTCTCGGACAACTTGCATGTGCTCACTCTAGAT
GTTTGTATTCTTGCGGCAGCGCCCTAGTCAATACAGGCTGACCATGTCAGTGGGCCTTGTGGGAAAGTGGTTCCATCCTT
CTTTCTCACCCTTTCCCCTCCAATCCATTTGACGTGGATAGAGTTGAGTGCAGTGCCCGCTGTTAGGTTTTGGTTTTGGG
TGGTTAGATGGTAGCTTCTTTGTTAGTCTAGTGGTGGCCAATCACGCTTAGCGACGGCCGATTCAATGTTAGCCTTCTCC
TGGATTCTGTATAGGCACTGCGGGTGCGTGGTGGTGTTGGTTTTTTTCTTGGCTGGCTACTGCCTCTCAAGGTCTTAGCT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis