Browse Element(s) Details


Os.57136.1.S1_at

Description gb:AK111002.1
DB_XREF= gi:32996211
TID=Os.57136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F01, full insert sequence.
FL= gb:AK111002.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4194010/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41900Os.8820.1.S1_a_at11/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41900Os.8820.1.S2_a_at9/1112+25933833..25942444SET domain containing protein, expressed
LOC_Os12g41910NANA12+25944283..25949410transposon protein, putative, Mutator sub-class, expressed
LOC_Os12g41920Os.27252.1.S1_a_at11/1112+25950908..25954370Myb-like DNA-binding domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S2_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930Os.47922.1.S1_x_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41930OsAffx.7859.1.S1_at11/1112+25956467..25959555SRP40, C-terminal domain containing protein, expressed
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57136.1.S1_at--119--3231Chr12:25966667..25966691 (25 bp)
CAAGATGAACATCGCGTCGTGGGCC
LOC_Os12g41940
Os.57136.1.S1_at--1155--2092Chr12:25966675..25966699 (25 bp)
ACATCGCGTCGTGGGCCAGCAAGGA
LOC_Os12g41940
Os.57136.1.S1_at--305--9333Chr12:25966725..25966749 (25 bp)
TCGCCGGAGAAGAGACCGAGACCGA
LOC_Os12g41940
Os.57136.1.S1_at--23--4351Chr12:25966813..25966837 (25 bp)
CCATGGCGTGGCAGGAGACGCACAA
LOC_Os12g41940
Os.57136.1.S1_at--548--1391Chr12:25966828..25966852 (25 bp)
AGACGCACAAGTGCAAGCTCGCGTT
LOC_Os12g41940
Os.57136.1.S1_at--503--5171Chr12:25966840..25966981 (25 bp)
GCAAGCTCGCGTTGAGGTTTCAGAG
LOC_Os12g41940
Os.57136.1.S1_at--1068--5891Chr12:25967009..25967033 (25 bp)
GAGCTGCCAGAAGGCCAAATTCGAA
LOC_Os12g41940
Os.57136.1.S1_at--313--91Chr12:25967027..25967051 (25 bp)
ATTCGAAGCCAAGATGAGGCACGCA
LOC_Os12g41940
Os.57136.1.S1_at--329--3471Chr12:25967941..25967965 (25 bp)
CAGGTGCACCGCATCCGGGAGACCG
LOC_Os12g41940
Os.57136.1.S1_at--833--9112Chr12:25967992..25968016 (25 bp)
TGCTGCAGCTGGCTGTTCCTCTGAA
LOC_Os12g41940
Os.57136.1.S1_at--1106--8471Chr12:25968001..25968025 (25 bp)
TGGCTGTTCCTCTGAACATCTGAAG
NONE
Target Sequence 
CAAGATGAACATCGCGTCGTGGGCCAGCAAGGACGACGACGACGAGCTCCCCCGCGCCTCGCCGGAGAAGAGACCGAGAC
CGAGACCGAGACCTCACTCCGGCGACGGCGGCGGCGAGGCCAAGAAGAGGGAGTTCGAGGCGCGCGCCATGGCGTGGCAG
GAGACGCACAAGTGCAAGCTCGCGTTGAGGTTTCAGAGGAAGGAGGTGAAGATTCAGGAATGGGAGAGCTGCCAGAAGGC
CAAATTCGAAGCCAAGATGAGGCACGCAGAGGTGCAGGCAGAGCAGATGAAGGCGAGGGCGAAGCAGAAGCTGAGCAGGA
GGCTGTCGGCGTTGAGCCACAAGGCGGAGGGGAAGCAGGCGAGGGTGGAGGCTCGCCGGAGCCGGCAGGCGGCGCGGCTG
GCCCGCCAGGTGCACCGCATCCGGGAGACCGGCGCCGCGCCGTCGCGCCTCCGCCGCTGCTGCAGCTGGCTGTTCCTCTG
AACATCTGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis