Browse Element(s) Details


Os.57139.1.S1_at

Description gb:AK111006.1
DB_XREF= gi:32996215
TID=Os.57139.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-F05, full insert sequence.
FL= gb:AK111006.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3745011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g37430OsAffx.26361.1.S1_x_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37430OsAffx.26361.1.S1_at11/114+22085990..22090232Lipoxygenase 5, putative, expressed
LOC_Os04g37440OsAffx.14175.1.S1_at11/114+22093180..22093638hypothetical protein
LOC_Os04g37450Os.57139.1.S1_at11/114+22094083..22094851expressed protein
LOC_Os04g37460Os.12927.1.S1_at11/114+22095005..22097350Glutamate decarboxylase, putative, expressed
LOC_Os04g37470Os.21320.1.S1_at10/114+22097743..22100498NADH dependent 6'-deoxychalcone synthase, putative, expressed
LOC_Os04g37480Os.8600.1.S1_at11/114+22102247..22104485NADH-dependent oxidoreductase 1, putative, expressed
LOC_Os04g37490Os.11816.1.S1_at11/114+22104786..22107807NADH-dependent oxidoreductase 2, putative, expressed
LOC_Os04g37500Os.1215.1.S1_at11/114+22111117..22113470Glutamate decarboxylase, putative, expressed
LOC_Os04g37510OsAffx.26362.1.S1_at11/114+22113602..22114033uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os04g37520OsAffx.4008.1.S1_at11/114+22115957..22118200expressed protein
LOC_Os04g37520Os.49478.1.S1_at1/114+22115957..22118200expressed protein
LOC_Os04g37530OsAffx.26363.1.S1_at11/114+22118427..22120817expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57139.1.S1_at--657--8351Chr04:22094658..22094682 (25 bp)
GGCGGCCCAAGATGTTGCTCGTCGT
LOC_Os04g37450
Os.57139.1.S1_at--803--5191Chr04:22094623..22094647 (25 bp)
GCAATTACCGGTGCGGTCTTCGACG
LOC_Os04g37450
Os.57139.1.S1_at--306--1671Chr04:22094471..22094495 (25 bp)
AGCCGCGGCTTTGCTTGGATAGTCC
LOC_Os04g37450
Os.57139.1.S1_at--480--8574Chr11:332750..332774 (25 bp)
TGGATAGTCCCGACTGGAGGCAGTC
NONE
Os.57139.1.S1_at--481--2811Chr04:22094377..22094401 (25 bp)
AAGTTGGCTCGCGTCGGAATCTTGG
LOC_Os04g37450
Os.57139.1.S1_at--1141--7891Chr04:22094351..22094375 (25 bp)
GGTTCGTAGGCGATGATGCCACCGC
LOC_Os04g37450
Os.57139.1.S1_at--342--3751Chr04:22094240..22094264 (25 bp)
CTCACCGCGTGAGTTGATGGATATT
LOC_Os04g37450
Os.57139.1.S1_at--843--5911Chr04:22094205..22094229 (25 bp)
GAGCTTTTTGATTTCTGTTTTGCAT
LOC_Os04g37450
Os.57139.1.S1_at--108--9031Chr04:22094181..22094205 (25 bp)
TGCACGTAGTGGCTGGCTAAAGTCT
LOC_Os04g37450
Os.57139.1.S1_at--60--4831Chr04:22094166..22094190 (25 bp)
GCTAAAGTCTGGCTCGTTCTTTCCA
LOC_Os04g37450
Os.57139.1.S1_at--260--3791Chr04:22094154..22094178 (25 bp)
CTCGTTCTTTCCAGTTATGCATGTA
LOC_Os04g37450
Target Sequence 
GGCGGCCCAAGATGTTGCTCGTCGTCCTCGCCCTCGCAATTACCGGTGCGGTCTTCGACGGCTCGCGAGTCGCTGGACCA
CATCTCCATCAACTGCACTGGCGGGGTCGGGGCCACATCCGGCTGCCGCTCCGTCCACTCGCGCCGTTCAGCACCGACGA
GGAGGGCGAGGCTCCTCGTCCCCGCTCAGCCGCGGCTTTGCTTGGATAGTCCCGACTGGAGGCAGTCGGCGGCGGGGAGG
GAGTGGGAACAGGAGCGGGACGACGGCGACGACAGAAGAGGAAGTTGGCTCGCGTCGGAATCTTGGTGGTTCGTAGGCGA
TGATGCCACCGCCGCCGCTGCCACCCGAGTTCGACGCGAGAAACGGCGTGCCTGCGCCGGGGCAGGCGGAGCAGGAGGCG
ATGGAGCTGGTGCGCGCGCTCACCGCGTGAGTTGATGGATATTTTGTAATCTTGAGCTTTTTGATTTCTGTTTTGCATGC
ACGTAGTGGCTGGCTAAAGTCTGGCTCGTTCTTTCCAGTTATGCATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis