Browse Element(s) Details


Os.57144.1.S1_at

Description gb:AK111018.1
DB_XREF= gi:32996227
TID=Os.57144.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57144 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-G07, full insert sequence.
FL= gb:AK111018.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1613011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16080NANA9+9811121..9816623retrotransposon protein, putative, unclassified
LOC_Os09g16090OsAffx.6292.1.S1_at11/119+9824633..9825835Cytokinin-O-glucosyltransferase 1, putative
LOC_Os09g16100NANA9+9826313..9830619retrotransposon protein, putative, unclassified
LOC_Os09g16110NANA9+9830991..9831266hypothetical protein
LOC_Os09g16120OsAffx.17730.1.S1_at10/119+9833418..9834694hypothetical protein
LOC_Os09g16130Os.57144.1.S1_at11/119+9838416..9838921expressed protein
LOC_Os09g16140OsAffx.17731.1.S1_at11/119+9842456..9842881hypothetical protein
LOC_Os09g16150OsAffx.29868.2.S1_at11/119+9848245..9849101hypothetical protein
LOC_Os09g16150OsAffx.12311.1.S1_x_at1/119+9848245..9849101hypothetical protein
LOC_Os09g16160OsAffx.17733.1.S1_at11/119+9856201..9859809hypothetical protein
LOC_Os09g16170OsAffx.29869.1.S1_at11/119+9860268..9861866hypothetical protein
LOC_Os09g16180OsAffx.17733.2.S1_at10/119+9863112..9864236hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57144.1.S1_at--1152--4051Chr09:9838847..9838871 (25 bp)
CGAGGCGCAGCAGTTATACGAGTAC
LOC_Os09g16130
Os.57144.1.S1_at--337--10171Chr09:9838833..9838857 (25 bp)
TATACGAGTACGTGTTGATCGAGCG
LOC_Os09g16130
Os.57144.1.S1_at--1058--1771Chr09:9838787..9838811 (25 bp)
ACCGGGCAGCCAGATGATCGCAGCG
LOC_Os09g16130
Os.57144.1.S1_at--55--471Chr09:9838660..9838684 (25 bp)
ATCTCCTCATCCTCAACTATGCAAT
LOC_Os09g16130
Os.57144.1.S1_at--1086--391Chr09:9838631..9838655 (25 bp)
ATCAGCTGCGATCATATCTGCTCAA
LOC_Os09g16130
Os.57144.1.S1_at--1030--231Chr09:9838618..9838642 (25 bp)
ATATCTGCTCAAAGTCTCGACCTGG
LOC_Os09g16130
Os.57144.1.S1_at--665--3291Chr09:9838609..9838633 (25 bp)
CAAAGTCTCGACCTGGCGATTGAAA
LOC_Os09g16130
Os.57144.1.S1_at--298--4611Chr09:9838594..9838618 (25 bp)
GCGATTGAAAACTAGACCGTAACAT
LOC_Os09g16130
Os.57144.1.S1_at--127--7051Chr09:9838576..9838600 (25 bp)
GTAACATCGGTAATTTCGAGCAATT
LOC_Os09g16130
Os.57144.1.S1_at--90--3991Chr09:9838560..9838584 (25 bp)
CGAGCAATTAGCAATTACCATGATT
LOC_Os09g16130
Os.57144.1.S1_at--867--172Chr09:9838422..9838446 (25 bp)
ATTTATTTCCTTAATCCTTGCCACG
LOC_Os09g16130
Target Sequence 
CGAGGCGCAGCAGTTATACGAGTACGTGTTGATCGAGCGCGAACGCCACCGCCCGCGGCCACCGGGCAGCCAGATGATCG
CAGCGGCGAGAGGCAGCGAAGAGGGGAACGCCGAGACGGCGAACGGCCGAGCCCTAGTGGCTGGGGGCTAGCCGTGGCTG
GCTCTCCGCCTCTGCCTCCTCGTTGTCATCTCCTCATCCTCAACTATGCAATCTTCATCAGCTGCGATCATATCTGCTCA
AAGTCTCGACCTGGCGATTGAAAACTAGACCGTAACATCGGTAATTTCGAGCAATTAGCAATTACCATGATTTTAATTTT
CTGATTAATTATTGCATTTTAAATGATCGATTCGATTGATTATGGAATTAATCAATTATCGAAAGTAATGTGAATGTATT
TTCTTTTTGCTTAAAACATGAAGACATTTATTTCCTTAATCCTTGCCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis