Browse Element(s) Details


Os.57148.1.S1_at

Description gb:AK111028.1
DB_XREF= gi:32996237
TID=Os.57148.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-H06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-H06, full insert sequence.
FL= gb:AK111028.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4167010/11Uncharacterized protein family UPF0016 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g41620OsAffx.29623.2.S1_s_at11/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41620Os.25022.1.A1_at1/118+26149187..26153100Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41630OsAffx.29624.1.S1_s_at11/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41630OsAffx.29623.2.S1_s_at1/118+26154545..26158623Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os08g41640OsAffx.29625.1.S1_at11/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41640OsAffx.29623.2.S1_s_at1/118+26160847..26166554Ubiquitin carboxyl-terminal hydrolase family protein
LOC_Os08g41650Os.53468.1.S1_at11/118+26168245..26169036expressed protein
LOC_Os08g41660OsAffx.29626.1.S1_at11/118+26171295..26171876hypothetical protein
LOC_Os08g41670Os.57148.1.S1_at10/118+26174601..26177536Uncharacterized protein family UPF0016 containing protein, expressed
LOC_Os08g41680OsAffx.17462.1.S1_at10/118+26179517..26180997expressed protein
LOC_Os08g41690Os.54259.1.S1_at11/118+26181912..26184983expressed protein
LOC_Os08g41700Os.50600.1.S1_at11/118+26186430..26189682expressed protein
LOC_Os08g41710Os.6151.1.S1_at11/118+26192162..26195774FHA domain containing protein, expressed
LOC_Os08g41720Os.53828.1.S1_at11/118+26199096..26202882Auxin Efflux Carrier family protein

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Gene Ontology Classification
GO idTypeName
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57148.1.S1_at--196--5391Chr08:26176512..26176536 (25 bp)
GAAGCACACTAACAGCGCAGCAACT
LOC_Os08g41670
Os.57148.1.S1_at--629--5051NONE
GCAGCAACTGTCCTTTATGCGTTCT
NONE
Os.57148.1.S1_at--872--10131Chr08:26175865..26175889 (25 bp)
TATGCGTTCTTTGGGCTACGGCTGC
LOC_Os08g41670
Os.57148.1.S1_at--488--9931Chr08:26175849..26175873 (25 bp)
TACGGCTGCTGTACATTGCTTGGAG
LOC_Os08g41670
Os.57148.1.S1_at--747--1391Chr08:26175266..26175290 (25 bp)
AGACGCATCTTCTCAAGGTTCTGTA
LOC_Os08g41670
Os.57148.1.S1_at--185--10571Chr08:26175038..26175058 (21 bp)
TTGGAGTCGTTTGTGTTGACCTTCC
LOC_Os08g41670
Os.57148.1.S1_at--828--4591Chr08:26175001..26175025 (25 bp)
GCGACCGAAGTCAGATTGCCACAAT
LOC_Os08g41670
Os.57148.1.S1_at--972--3151Chr08:26174865..26175003 (25 bp)
AATTGCGTTGGCCACTCACAAAAAT
LOC_Os08g41670
Os.57148.1.S1_at--134--8511Chr08:26174775..26174799 (25 bp)
TGGCAGCATGCTGGCATCCAAGATA
LOC_Os08g41670
Os.57148.1.S1_at--477--4911Chr08:26174707..26174731 (25 bp)
GCTTCTCTCTGTCATCATATTTCTA
LOC_Os08g41670
Os.57148.1.S1_at--1072--7731Chr08:26174635..26174659 (25 bp)
GGTGTATATTCCGTTGCAGCCAAGC
LOC_Os08g41670
Target Sequence 
GAAGCACACTAACAGCGCAGCAACTGTCCTTTATGCGTTCTTTGGGCTACGGCTGCTGTACATTGCTTGGAGGTCAGATT
CTAAGGCATCACAAAAGAAGGAAATTGAAGAAGTAGAGGAAAAGCTGGAAGCAGGACAAGGGAAATCAACATTTAGACGC
ATCTTCTCAAGGTTCTGTACTCCTATTTTTTTGGAGTCGTTTGTGTTGACCTTCCTGGCGGAGTGGGGCGACCGAAGTCA
GATTGCCACAATTGCGTTGGCCACTCACAAAAATGCGGTAGGGGTCGCTGTGGGAGCAACCTTGGGGCACACCATCTGCA
CATCGTTCGCTGTGGTGGGTGGCAGCATGCTGGCATCCAAGATATCTCAGGGCACAGTGGCCACCATTGGAGGCCTCCTC
TTCCTTGGCTTCTCTCTGTCATCATATTTCTACCCACCATTGTGAATTTTGTGATGAACTGATGACATCCTACCAAGGGG
GTGTATATTCCGTTGCAGCCAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis