Browse Element(s) Details


Os.57198.1.S1_at

Description gb:AK111127.1
DB_XREF= gi:32996336
TID=Os.57198.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57198 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-C08, full insert sequence.
FL= gb:AK111127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0502011/11expressed protein
LOC_Os01g142702/11F-box domain containing protein
LOC_Os09g314421/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05000OsAffx.30822.1.S1_at11/1111+2150519..2153474expressed protein
LOC_Os11g05010Os.7649.1.S1_at11/1111+2164071..2167034heavy metal-associated domain containing protein, expressed
LOC_Os11g05020Os.57198.1.S1_at11/1111+2172999..2173577expressed protein
LOC_Os11g05020OsAffx.22046.2.S1_s_at2/1111+2172999..2173577expressed protein
LOC_Os11g05030OsAffx.10490.1.S1_at10/1111+2175591..2179079retrotransposon protein, putative, unclassified
LOC_Os11g05040Os.20602.2.S1_x_at11/1111+2197132..2199306hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57198.1.S1_at--44--3373Chr05:23126056..23126075 (20 bp)
CACCGGTATCCCGTTTGGGCTCGAT
NONE
Os.57198.1.S1_at--81--7591Chr11:2173490..2173514 (25 bp)
GGGCTCGATCGGGACAGGACAATTT
LOC_Os11g05020
Os.57198.1.S1_at--572--10452Chr11:2173463..2173487 (25 bp)
TTAGCAATCACCAGAAATCATCACG
LOC_Os11g05020
Os.57198.1.S1_at--416--3074Chr05:23126113..23126137 (25 bp)
AATCATCACGAGCTTATCCGAGTCC
NONE
Os.57198.1.S1_at--381--6111Chr11:2173429..2173453 (25 bp)
GAGTCCCACTCCCAAGAGAGACACA
LOC_Os11g05020
Os.57198.1.S1_at--448--2991Chr11:2173405..2173429 (25 bp)
AATGTTTCTTGTGCTTATCCGAGTC
LOC_Os11g05020
Os.57198.1.S1_at--593--9692Chr11:2173376..2173400 (25 bp)
TCACAATTCTCTCACCGTGGGCATG
LOC_Os11g05020
Os.57198.1.S1_at--859--8771Chr11:2173178..2173202 (25 bp)
TGTTTTCTTCGGTTGACAGTCTCCA
LOC_Os11g05020
Os.57198.1.S1_at--877--5652Chr11:2173164..2173188 (25 bp)
GACAGTCTCCATCAACAGGAGGTTC
LOC_Os11g05020
Os.57198.1.S1_at--632--672Chr11:2173053..2173077 (25 bp)
ATGAACTTATTCATGTCCACTCCCT
LOC_Os11g05020
Os.57198.1.S1_at--799--3792Chr11:2173034..2173058 (25 bp)
CTCCCTGTACATATATTTGATCTGG
LOC_Os11g05020
Target Sequence 
CACCGGTATCCCGTTTGGGCTCGATCGGGACAGGACAATTTTTTTAGCAATCACCAGAAATCATCACGAGCTTATCCGAG
TCCCACTCCCAAGAGAGACACAATGTTTCTTGTGCTTATCCGAGTCCCACTCACAATTCTCTCACCGTGGGCATGGCGCG
TGAGATCTCGCTGGCGCCAACGGCGGCGGTGGAGGAGCCGGCGGCGGCACCTGCTCGCGTCCGCCGGCGGCGGCAGCTCC
ACCTCTTCAGTGTCGCCGCTGAAGTGCACGAGGTCAGTGTGGGAGAGCGGCGTGAGCGTGGTGGTGGCGCCGACGCCGGC
GCCCACCGTGTTTTCTTCGGTTGACAGTCTCCATCAACAGGAGGTTCTTCATTTTCTTGCTTTAAGCAGTGTCAAGAAAA
TCGGTGACATGAATTGGTACGAGCATATAGATGATACATCGATCGAATCTGATATGAACTTATTCATGTCCACTCCCTGT
ACATATATTTGATCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis