Browse Element(s) Details


Os.57208.1.S1_at

Description gb:AK111140.1
DB_XREF= gi:32996349
TID=Os.57208.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-176-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-176-E01, full insert sequence.
FL= gb:AK111140.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2222011/11SCP-like extracellular protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g22190Os.31845.1.S1_x_at1/114+12545306..12548516hypothetical protein
LOC_Os04g22200Os.52731.1.S1_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.22699.1.S1_x_at2/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22200OsAffx.8279.1.S1_at1/114+12548950..12555079retrotransposon protein, putative, unclassified
LOC_Os04g22210OsAffx.26093.1.S1_at11/114+12560644..12562194SCP-like extracellular protein
LOC_Os04g22220Os.57208.1.S1_at11/114+12563861..12564567SCP-like extracellular protein, expressed
LOC_Os04g22230OsAffx.26094.1.S1_at11/114+12566808..12567374SCP-like extracellular protein
LOC_Os04g22240OsAffx.3855.1.S1_at11/114+12573097..12578028transcription factor, putative, expressed
LOC_Os04g22250NANA4+12582271..12582507retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g22260OsAffx.13919.1.S1_at11/114+12583677..12583895hypothetical protein
LOC_Os04g22270OsAffx.20519.2.S1_at11/114+12584869..12587531expressed protein
LOC_Os04g22270Os.38286.1.S1_at10/114+12584869..12587531expressed protein
LOC_Os04g22270OsAffx.20519.1.S1_at1/114+12584869..12587531expressed protein
LOC_Os04g22280OsAffx.3857.1.S1_x_at11/114+12588574..12588801hypothetical protein
LOC_Os04g22280OsAffx.3857.1.S1_at11/114+12588574..12588801hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57208.1.S1_at--856--4371Chr04:12563975..12563999 (25 bp)
CCAACAGTTTGTTGCCGGCGGAGCA
LOC_Os04g22220
Os.57208.1.S1_at--973--6691Chr04:12564000..12564024 (25 bp)
GTTCCTGCGGGCTCACAACGAGGCC
LOC_Os04g22220
Os.57208.1.S1_at--378--3591Chr04:12564150..12564174 (25 bp)
CTTGTACGGGCGGAACCTGTACAGG
LOC_Os04g22220
Os.57208.1.S1_at--684--5631Chr04:12564364..12564388 (25 bp)
GACACGTGCCCTCTCGTGTTGGACA
LOC_Os04g22220
Os.57208.1.S1_at--909--4391Chr04:12564431..12564455 (25 bp)
GCCAGCGCCCTTACTAACGCATATA
LOC_Os04g22220
Os.57208.1.S1_at--865--3731Chr04:12564444..12564468 (25 bp)
CTAACGCATATATATGCCGCGGTAT
LOC_Os04g22220
Os.57208.1.S1_at--34--4531Chr04:12564459..12564483 (25 bp)
GCCGCGGTATATATATGTAGCACAT
LOC_Os04g22220
Os.57208.1.S1_at--144--751Chr04:12564473..12564497 (25 bp)
ATGTAGCACATGCACGTGCGAGCTC
LOC_Os04g22220
Os.57208.1.S1_at--1137--9011Chr04:12564483..12564507 (25 bp)
TGCACGTGCGAGCTCATAAAATGTT
LOC_Os04g22220
Os.57208.1.S1_at--617--2471Chr04:12564518..12564542 (25 bp)
AACACGTGCGTGATCAACTTTCAAG
LOC_Os04g22220
Os.57208.1.S1_at--899--5451Chr04:12564542..12564566 (25 bp)
GAACGTTTTTGTTCTTGCATTGGAA
LOC_Os04g22220
Target Sequence 
CCAACAGTTTGTTGCCGGCGGAGCAGTTCCTGCGGGCTCACAACGAGGCCCGCGCGGCGGTGGGCGTGCCGCCGCTGGCG
TGGAACGCGACGATCGCGCTGGACGCGCAGCGGTACGCCGGCGAGCTCCGGGCGAGCTGCGAGGCGCGGCCGGTGTGGGC
GTGGGGCACCGACGGCTTGTACGGGCGGAACCTGTACAGGGGGAGCGGCCCGCGGGTGCGCGCGGGCGCGGACGCGTCGG
CGCACTGGGCGGAGGGCGCGCGGTGGTACGACCGCGACGGCGACTCGTGCGCGGCGCCGCCGGGGCGGTGCTGCGGCGAG
TACACGCAGATGGTGTGGCGCGCCACGACGCAGATCGGGTGCGCGCGCTGGTTGTGCCGCTGCCTGGGCGACACGTGCCC
TCTCGTGTTGGACACCGTCGCCGTCTGCGAGTACTACCCGCCGGGCAACATCGCCGGCCAGCGCCCTTACTAACGCATAT
ATATGCCGCGGTATATATATGTAGCACATGCACGTGCGAGCTCATAAAATGTTGTGGTGTAATAACACGTGCGTGATCAA
CTTTCAAGAACGTTTTTGTTCTTGCATTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis