Browse Element(s) Details


Os.57321.1.S1_at

Description gb:AK111298.1
DB_XREF= gi:32996507
TID=Os.57321.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57321 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-A12, full insert sequence.
FL= gb:AK111298.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3371011/11LEC14B protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed
LOC_Os05g33700OsAffx.27145.1.S1_at10/115+19750857..197551994F5 protein family protein
LOC_Os05g33700OsAffx.3509.1.S1_at5/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.27131.1.S1_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.5698.1.S1_s_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33720Os.40855.2.S1_x_at7/115+19780887..19781879hypothetical protein
LOC_Os05g33720Os.40855.4.S1_x_at1/115+19780887..19781879hypothetical protein
LOC_Os05g33730Os.18468.1.S1_at11/115+19785334..19788132serine hydrolase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009909biological_processregulation of flower development
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57321.1.S1_at--1032--10691Chr05:19763103..19763127 (25 bp)
TTGAATCGCGTTGCGGCGGAATCAA
LOC_Os05g33710
Os.57321.1.S1_at--851--371Chr05:19763083..19763107 (25 bp)
ATCAACAGCTTGGTGCGGCGTGGTA
LOC_Os05g33710
Os.57321.1.S1_at--734--3931Chr05:19763068..19763092 (25 bp)
CGGCGTGGTAGCATTGTTCTGTGTT
LOC_Os05g33710
Os.57321.1.S1_at--666--1471Chr05:19762949..19762973 (25 bp)
AGCACTTTGTAGAGTCTATGCCGAA
LOC_Os05g33710
Os.57321.1.S1_at--906--591Chr05:19762932..19762956 (25 bp)
ATGCCGAATCTTTTGTTGCTTTTGG
LOC_Os05g33710
Os.57321.1.S1_at--968--5571Chr05:19762850..19762874 (25 bp)
GAAAGGTCTAAGCTGCCTGCTATGA
LOC_Os05g33710
Os.57321.1.S1_at--302--1271Chr05:19762783..19762807 (25 bp)
AGATCACTCTTGCTGGCTATTTGGT
LOC_Os05g33710
Os.57321.1.S1_at--242--771Chr05:19762736..19762760 (25 bp)
ATGTCTTAACGAATGCTTCCATGTG
LOC_Os05g33710
Os.57321.1.S1_at--17--4931Chr05:19762722..19762746 (25 bp)
GCTTCCATGTGTAATCTATTTGCCA
LOC_Os05g33710
Os.57321.1.S1_at--1081--2471Chr05:19762693..19762717 (25 bp)
AACAGGGCACTAACCAATCACTTTA
LOC_Os05g33710
Os.57321.1.S1_at--449--1971Chr05:19762615..19762639 (25 bp)
ACTGATCCTTCGTGTTGTGCAATAT
LOC_Os05g33710
Target Sequence 
TTGAATCGCGTTGCGGCGGAATCAACAGCTTGGTGCGGCGTGGTAGCATTGTTCTGTGTTGGCTGGGGATAGGTGCAGGG
TGGTTTTCAGTGGAATCACGTATTCAAGGCTTTTTTTATATATAAAAAAACGTGGTCATGGAATCAATATTATCAGCACT
TTGTAGAGTCTATGCCGAATCTTTTGTTGCTTTTGGAAGAATATATGATGTCAGTTGTTAGTGATTTTGCACTGAGGTGA
CTGGTTGAATTAGGAAAGGTCTAAGCTGCCTGCTATGAGGTAGGCAAGAAGGCTGCATGAATGATGAATCAGTCAATATC
AGATCACTCTTGCTGGCTATTTGGTCCCAACTTTTACTAGTTAGATAATGTCTTAACGAATGCTTCCATGTGTAATCTAT
TTGCCATAGTAACAGGGCACTAACCAATCACTTTAGCTGCAACTTTAGGGTTTATTATGTTTCCATGGCTTGATGGTAAT
ATTGTCAAACTGATCCTTCGTGTTGTGCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57321.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis