Browse Element(s) Details


Os.5733.1.A1_s_at

Description gb:BI305452
DB_XREF= gi:14980774
DB_XREF=NLP_1_K05
CLONE=NLP_1_K05
TID=Os.5733.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5733 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_176980.1 (A.thaliana) putative C2H2-type zinc finger protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2765011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27640NANA9+16798951..16800494hypothetical protein
LOC_Os09g27650Os.5733.1.A1_s_at11/119+16821231..16824664Zinc finger, C2H2 type family protein, expressed
LOC_Os09g27660Os.20476.2.S1_a_at11/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.57346.1.S1_at10/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660Os.20476.1.A1_at7/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27660OsAffx.1705.1.S1_at1/119+16827921..16837339ANTH domain containing protein, expressed
LOC_Os09g27670OsAffx.17937.1.S1_at11/119+16845524..16846607hypothetical protein
LOC_Os09g27680Os.50860.1.S1_at2/119+16847165..16847464expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5733.1.A1_s_at--376--9871Chr09:16823980..16824004 (25 bp)
TACAGCACGCTAACAGCATGGGCAT
LOC_Os09g27650
Os.5733.1.A1_s_at--284--1531Chr09:16823994..16824018 (25 bp)
AGCATGGGCATCATGTAGCCAAAGA
LOC_Os09g27650
Os.5733.1.A1_s_at--932--2331Chr09:16824014..16824038 (25 bp)
AAAGAAGAATCCAGTCCAGCCCAGC
LOC_Os09g27650
Os.5733.1.A1_s_at--829--511Chr09:16824076..16824100 (25 bp)
ATCGAATCTCTTCTTGTACGTTCCA
LOC_Os09g27650
Os.5733.1.A1_s_at--696--6991Chr09:16824091..16824115 (25 bp)
GTACGTTCCATTTCACCAGCAAATT
LOC_Os09g27650
Os.5733.1.A1_s_at--251--1391Chr09:16824143..16824167 (25 bp)
AGACGCTGCATATGCTGCTAGGCTA
LOC_Os09g27650
Os.5733.1.A1_s_at--331--10071Chr09:16824170..16824194 (25 bp)
TAGTGTTTTTTGTGTCTTGCCGGCC
LOC_Os09g27650
Os.5733.1.A1_s_at--429--3471Chr09:16824206..16824230 (25 bp)
CAGGGCTTGCTAATCGTGACGTGCA
LOC_Os09g27650
Os.5733.1.A1_s_at--898--7371Chr09:16824221..16824245 (25 bp)
GTGACGTGCATGGAATCTTTTTGTT
LOC_Os09g27650
Os.5733.1.A1_s_at--1087--8791Chr09:16824242..16824266 (25 bp)
TGTTGTTTGCTTCTCATTGGACTTT
LOC_Os09g27650
Os.5733.1.A1_s_at--214--8531Chr09:16824259..16824283 (25 bp)
TGGACTTTCCTGAGACAGCATTAGT
LOC_Os09g27650
Target Sequence 
TACAGCACGCTAACAGCATGGGCATCATGTAGCCAAAGAAGAATCCAGTCCAGCCCAGCTAGCTCGCGAAACGCGCCATC
TCTTNGTCTACCTCTGATCGAATCTCTTCTTGTACGTTCCATTTCACCAGCAAATTAAGACGACGAGATCGTGTGGTGTA
ATTAGACGCTGCATATGCTGCTAGGCTAGCTAGTGTTTTTTGTGTCTTGCCGGCCGGAAAGCTAAGCAGGGCTTGCTAAT
CGTGACGTGCATGGAATCTTTTTGTTGTTTGCTTCTCATTGGACTTTCCTGAGACAGCATTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5733.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis