Browse Element(s) Details


Os.57414.1.S1_x_at

Description gb:AB101649.1
DB_XREF= gi:31339104
TID=Os.57414.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57414 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Roc6 mRNA for GL2-type homeodomain protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) Roc6 mRNA for GL2-type homeodomain protein, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3576011/11OCL3 protein, putative, expressed
LOC_Os10g424901/11OCL4 protein, putative, expressed
LOC_Os02g452501/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35720OsAffx.6485.1.S1_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35720OsAffx.6485.1.S1_x_at10/119+20541270..20547711hypothetical protein
LOC_Os09g35730Os.7783.1.S1_at11/119+20549370..20552826membrane protein, putative, expressed
LOC_Os09g35740Os.41257.1.S1_at1/119+20557515..20558112hypothetical protein
LOC_Os09g35750OsAffx.30143.1.S1_at10/119+20559756..20561287hypothetical protein
LOC_Os09g35760Os.57414.1.S1_x_at11/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760OsAffx.6486.1.S1_x_at10/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35760Os.57416.1.S1_x_at1/119+20568102..20573844OCL3 protein, putative, expressed
LOC_Os09g35770Os.52917.1.S1_at1/119+20575896..20578473transposon protein, putative, Mutator sub-class
LOC_Os09g35780OsAffx.30144.1.S1_at11/119+20587366..20588179expressed protein
LOC_Os09g35790Os.11941.2.S1_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.54707.1.S1_x_at11/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790Os.11941.1.S1_at10/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed
LOC_Os09g35790OsAffx.30145.1.S1_at7/119+20590771..20594662HSF-type DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57414.1.S1_x_at--426--2171Chr09:20573060..20573347 (25 bp)
AAATCCAAGAACTCGAAGCCGTGTT
LOC_Os09g35760
Os.57414.1.S1_x_at--284--2671Chr09:20573213..20573233 (21 bp)
AAGCCGTGTTCAAGGAGTGTCCACA
LOC_Os09g35760
Os.57414.1.S1_x_at--626--6111Chr09:20573199..20573223 (25 bp)
GAGTGTCCACATCCTGACGAGAAGC
LOC_Os09g35760
Os.57414.1.S1_x_at--694--2731Chr09:20573178..20573202 (25 bp)
AAGCAACGGATGGAGCTCAGCCGGC
LOC_Os09g35760
Os.57414.1.S1_x_at--662--1373Chr10:22585239..22585258 (20 bp)
AGAGCCGCCAGGTCAAGTTCTGGTT
LOC_Os10g42490
Os.57414.1.S1_x_at--1099--3031Chr09:20573116..20573136 (21 bp)
AATCGCCGCACCCAGATGAAGCAGA
LOC_Os09g35760
Os.57414.1.S1_x_at--504--5391Chr09:20572986..20573008 (23 bp)
GAAGCAGACGCAGATCGAGCGGCAT
LOC_Os09g35760
Os.57414.1.S1_x_at--743--9371Chr09:20572972..20572996 (25 bp)
TCGAGCGGCATGAGAACGCGCTGCT
LOC_Os09g35760
Os.57414.1.S1_x_at--743--1432Chr09:20572918..20572942 (25 bp)
AGAACATGACGATCCGGGAGGCGAT
LOC_Os09g35760
Os.57414.1.S1_x_at--140--711Chr09:20572895..20572919 (25 bp)
ATGAGGAACCCGATGTGCGCGAGCT
LOC_Os09g35760
Os.57414.1.S1_x_at--997--8551Chr09:20572837..20572861 (25 bp)
TGGAGGAGCAGCACCTGCGCATCGA
LOC_Os09g35760
Target Sequence 
AAATCCAAGAACTCGAAGCCGTGTTCAAGGAGTGTCCACATCCTGACGAGAAGCAACGGATGGAGCTCAGCCGGCGGCTC
AACCTCGAGAGCCGCCAGGTCAAGTTCTGGTTCCAGAATCGCCGCACCCAGATGAAGCAGACGCAGATCGAGCGGCATGA
GAACGCGCTGCTGCGGCAGGAGAACGACAAGCTGAGGGCGGAGAACATGACGATCCGGGAGGCGATGAGGAACCCGATGT
GCGCGAGCTGCGGCGGCGCGGCGGTGCTCGGCGAGGTGTCGCTGGAGGAGCAGCACCTGCGCATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57414.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis