Browse Element(s) Details


Os.57416.1.S1_x_at

Description gb:AB101651.1
DB_XREF= gi:31339108
TID=Os.57416.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Roc8 mRNA for GL2-type homeodomain protein, partial cds
DEF=Oryza sativa (japonica cultivar-group) Roc8 mRNA for GL2-type homeodomain protein, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1060011/11START domain containing protein, expressed
LOC_Os10g424902/11OCL4 protein, putative, expressed
LOC_Os09g357601/11OCL3 protein, putative, expressed
LOC_Os08g041901/11START domain containing protein, expressed
LOC_Os02g452501/11START domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10590OsAffx.15355.1.S1_at10/116+5496370..5497772hypothetical protein
LOC_Os06g10600OsAffx.27556.2.S1_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600Os.57416.1.S1_x_at11/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10600OsAffx.27556.1.S1_s_at1/116+5498343..5501412START domain containing protein, expressed
LOC_Os06g10610NANA6+5521554..5522177hypothetical protein
LOC_Os06g10620Os.6853.1.S1_at11/116+5522782..5527577KOW domain-containing transcription factor family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009913biological_processepidermal cell differentiation
GO:0043481biological_processanthocyanin accumulation in tissues in response to UV light
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57416.1.S1_x_at--833--3391Chr06:5501175..5501328 (25 bp)
CAGCTCGAGGCGATGTTCAAGGAGT
LOC_Os06g10600
Os.57416.1.S1_x_at--285--10871Chr06:5501100..5501124 (25 bp)
TTGGAGCCGAGGCAGATCAAGTTCT
LOC_Os06g10600
Os.57416.1.S1_x_at--121--9735Chr10:22585227..22585251 (25 bp)
TCAAGTTCTGGTTCCAGAATCGCCG
LOC_Os10g42490
Os.57416.1.S1_x_at--820--1472Chr10:22585213..22585236 (24 bp)
AGAATCGCCGGACCCAGATGAAGGC
LOC_Os10g42490
Os.57416.1.S1_x_at--314--8111Chr06:5500918..5501084 (25 bp)
GGACCCAGATGAAGGCGCAGCACGA
LOC_Os06g10600
Os.57416.1.S1_x_at--1146--1851Chr06:5500897..5500921 (25 bp)
ACGAGCGGGCGGACAACTGCTTCCT
LOC_Os06g10600
Os.57416.1.S1_x_at--566--5951Chr06:5500865..5500889 (25 bp)
GAGAACGACAAGATCCGGTGCGAGA
LOC_Os06g10600
Os.57416.1.S1_x_at--1028--7291Chr06:5500848..5500872 (25 bp)
GTGCGAGAACATCGCCATCCGCGAG
LOC_Os06g10600
Os.57416.1.S1_x_at--802--4611Chr06:5500828..5500852 (25 bp)
GCGAGGCCCTCAAGAACGTCATCTG
LOC_Os06g10600
Os.57416.1.S1_x_at--184--9451Chr06:5500780..5500804 (25 bp)
TCGGCGAGGACTACTTCGACGAGCA
LOC_Os06g10600
Os.57416.1.S1_x_at--744--10631Chr06:5500766..5500790 (25 bp)
TTCGACGAGCAGAAGCTTCGCATGG
LOC_Os06g10600
Target Sequence 
CAGCTCGAGGCGATGTTCAAGGAGTGCCCCCACCCGGACGAGAACCAGCGGGCGCAGCTTAGCCGGGAGCTCGGGTTGGA
GCCGAGGCAGATCAAGTTCTGGTTCCAGAATCGCCGGACCCAGATGAAGGCGCAGCACGAGCGGGCGGACAACTGCTTCC
TCCGCGCCGAGAACGACAAGATCCGGTGCGAGAACATCGCCATCCGCGAGGCCCTCAAGAACGTCATCTGCCCCACCTGC
GGCGGCCCTCCCGTCGGCGAGGACTACTTCGACGAGCAGAAGCTTCGCATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57416.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis