Browse Element(s) Details


Os.57451.1.S1_x_at

Description gb:D10435.1
DB_XREF= gi:218086
TID=Os.57451.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57451 (NCBI UniGene Cluster)
UG_TITLE=Rice mRNA for ras-related Hrab1B protein (241 gene), partial sequence
DEF=Rice mRNA for ras-related Hrab1B protein (241 gene), partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g378003/11Ras-related protein RIC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g37760Os.19115.1.S1_at11/111+21445766..21451610Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein, expressed
LOC_Os01g37770Os.49606.1.S1_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37770Os.22790.1.A1_x_at11/111+21451791..21455204RWD domain containing protein, expressed
LOC_Os01g37780OsAffx.8975.1.S1_at11/111+21461764..21463263hypothetical protein
LOC_Os01g37790Os.20002.1.S1_at11/111+21465717..21469941expressed protein
LOC_Os01g37800Os.6802.1.S1_at11/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37800Os.57451.1.S1_x_at3/111+21470348..21473223Ras-related protein RIC1, putative, expressed
LOC_Os01g37810OsAffx.23546.1.S1_at11/111+21477308..21477697expressed protein
LOC_Os01g37820Os.38090.2.S1_x_at11/111+21478387..21482486expressed protein
LOC_Os01g37820Os.38090.1.S1_at11/111+21478387..21482486expressed protein
LOC_Os01g37825Os.6069.1.S1_at11/111+21488749..21494266peptidase M16 family protein, putative, expressed
LOC_Os01g37832OsAffx.11366.1.S1_at11/111+21494720..21499508GM14633p, putative, expressed
LOC_Os01g37832Os.13544.1.S1_x_at11/111+21494720..21499508GM14633p, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006888biological_processER to Golgi vesicle-mediated transport
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57451.1.S1_x_at--617--9351NONE
TCGACTCCCGGAGATTCGCCGTCTT
NONE
Os.57451.1.S1_x_at--682--8391NONE
GGCGCCGTCATGAATCCCGAGTATG
NONE
Os.57451.1.S1_x_at--116--4511NONE
GCCGTCATGAATCCCGAGTATGACT
NONE
Os.57451.1.S1_x_at--1120--6071Chr01:21472597..21472781 (25 bp)
GAGTATGACTACCTCTTCAAGCTTC
LOC_Os01g37800
Os.57451.1.S1_x_at--1108--9551Chr01:21472584..21472608 (25 bp)
TCTTCAAGCTTCTGCTCATCGGAGA
LOC_Os01g37800
Os.57451.1.S1_x_at--97--2711Chr01:21472579..21472603 (25 bp)
AAGCTTCTGCTCATCGGAGACTCGG
LOC_Os01g37800
Os.57451.1.S1_x_at--993--3731NONE
CTCATCGGAGACTCGGGCGTCGTGA
NONE
Os.57451.1.S1_x_at--1040--4891NONE
GCTTCCTGAGGTTTTTCGGGACGAG
NONE
Os.57451.1.S1_x_at--124--6811NONE
GTTTTTCGGGACGAGTCCATAATCT
NONE
Os.57451.1.S1_x_at--1088--5771NONE
GACGAGTCCATAATCTGGGAGAGCT
NONE
Os.57451.1.S1_x_at--434--6091NONE
GAGTCCATAATCTGGGAGAGCTATA
NONE
Target Sequence 
TCGACTCCCGGAGATTCGCCGTCTTCGCCGGCGCCGTCATGAATCCCGAGTATGACTACCTCTTCAAGCTTCTGCTCATC
GGAGACTCGGGCGTCGTGAAGNTCTTCCCTNGCTTCCTGAGGTTTTTCGGGACGAGTCCATAATCTGGGAGAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57451.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis