Browse Element(s) Details


Os.57480.1.S1_x_at

Description gb:D21286.1
DB_XREF= gi:429000
TID=Os.57480.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57480 (NCBI UniGene Cluster)
UG_TITLE=SS145 mRNA for NeIF-5A2, partial sequence
DEF=Oryza sativa SS145 mRNA for NeIF-5A2, partial sequence.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g405801/11Eukaryotic translation initiation factor 5A, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40550Os.22263.1.S1_a_at11/117+24291094..24297488protein kinase family protein, putative, expressed
LOC_Os07g40560NANA7+24306547..24307191hypothetical protein
LOC_Os07g40570Os.23384.1.A1_at11/117+24310208..24313688WRKY DNA binding domain containing protein, expressed
LOC_Os07g40580Os.6385.1.S1_at11/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40580Os.57480.1.S1_x_at1/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified
LOC_Os07g40600NANA7+24327386..24328414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57480.1.S1_x_at--953--5931NONE
GAGCAGATCTTGTGCGCTGAAGGAC
NONE
Os.57480.1.S1_x_at--925--1271NONE
AGATCTTGTGCGCTGAAGGACATTG
NONE
Os.57480.1.S1_x_at--979--8691Chr07:24316424..24316448 (25 bp)
TGTGCGCTGAAGGACATTGGCCCCA
LOC_Os07g40580
Os.57480.1.S1_x_at--424--7051NONE
GTAACTCCCTCAACGTGGAAGGCAG
NONE
Os.57480.1.S1_x_at--222--2551NONE
AACTCCCTCAACGTGGAAGGCAGAT
NONE
Os.57480.1.S1_x_at--168--3751NONE
CTCAACGTGGAAGGCAGATCAGCGG
NONE
Os.57480.1.S1_x_at--528--8231NONE
GGCAACTCCCCTCAAGTGGATGGCA
NONE
Os.57480.1.S1_x_at--593--2551NONE
AACTCCCCTCAAGTGGATGGCAGTA
NONE
Os.57480.1.S1_x_at--925--3791NONE
CTCCCCTCAAGTGGATGGCAGTACA
NONE
Os.57480.1.S1_x_at--159--4211NONE
CCCCTCAAGTGGATGGCAGTACAGT
NONE
Os.57480.1.S1_x_at--343--4291NONE
CCTCAAGTGGATGGCAGTACAGTGG
NONE
Target Sequence 
GAGCAGATCTTGTGCGCTGAAGGACATTGGCCCCANGTAACTCCCTCAACGTGGAAGGCAGATCAGCGGGGCAACTCCCC
TCAAGTGGATGGCAGTACAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57480.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis