Browse Element(s) Details


Os.11328.1.S1_at

Description gb:AK105587.1
DB_XREF= gi:32990796
TID=Os.11328.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.11328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-129-A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-129-A03, full insert sequence.
FL= gb:AK105587.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4062011/11saccharopine dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40580Os.6385.1.S1_at11/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40580Os.57480.1.S1_x_at1/117+24316007..24319279Eukaryotic translation initiation factor 5A, putative, expressed
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified
LOC_Os07g40600NANA7+24327386..24328414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40630Os.27488.1.S1_at10/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40630OsAffx.11967.1.S1_x_at1/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40640OsAffx.16657.1.S1_at6/117+24354024..24355293expressed protein
LOC_Os07g40640Os.5141.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40640OsAffx.7500.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11328.1.S1_at--499--951Chr07:24343712..24343736 (25 bp)
AGGAACAGGTGAGCAGCGCCTCGTT
LOC_Os07g40620
Os.11328.1.S1_at--108--4471Chr07:24343729..24343753 (25 bp)
GCCTCGTTCAAGATGTGGTTCGTCG
LOC_Os07g40620
Os.11328.1.S1_at--917--411Chr07:24343813..24343837 (25 bp)
ATCATCACGAGGGTTTCGGGACCAG
LOC_Os07g40620
Os.11328.1.S1_at--473--10591Chr07:24343827..24343851 (25 bp)
TTCGGGACCAGAGATCGGCTACATC
LOC_Os07g40620
Os.11328.1.S1_at--207--5871Chr07:24343893..24343917 (25 bp)
GAGCCAGCGAGGGAACCTACCTAAG
LOC_Os07g40620
Os.11328.1.S1_at--881--9351Chr07:24343990..24344014 (25 bp)
TCGTTCGACCTTGTCTCAACTAGGA
LOC_Os07g40620
Os.11328.1.S1_at--127--2691Chr07:24344035..24344059 (25 bp)
AAGCTGAGCATCTACCGGTTTGTTC
LOC_Os07g40620
Os.11328.1.S1_at--1041--3751Chr07:24344091..24344115 (25 bp)
CTCTTGTTGCTACCTTACACTGAAG
LOC_Os07g40620
Os.11328.1.S1_at--387--2591Chr07:24344117..24344141 (25 bp)
AACGTACTGTAGTAGTCTCTTGCTA
LOC_Os07g40620
Os.11328.1.S1_at--244--9531Chr07:24344132..24344156 (25 bp)
TCTCTTGCTACGTGTGTTGTGTTTG
LOC_Os07g40620
Os.11328.1.S1_at--828--2391Chr07:24344194..24344218 (25 bp)
AAACTATGTGTTGTCCTTGTGTGTA
LOC_Os07g40620
Target Sequence 
AGGAACAGGTGAGCAGCGCCTCGTTCAAGATGTGGTTCGTCGGGCGTGGCTACAGCGACGCGGCTCGTGCATCGGACCGC
GGGAGCAAGCCTGACAAGGAGATCATCACGAGGGTTTCGGGACCAGAGATCGGCTACATCACAACCCCGATCGTCCTGGT
CCAATGCGCCCTCGTCCTGCTGAGCCAGCGAGGGAACCTACCTAAGGGCGGGGTGTACACACCGGGTGCCGTTTTCGGCC
CTACCGATATCCAGCAGCGCCTCCAGGAGAATGGCCTGTCGTTCGACCTTGTCTCAACTAGGACACTGTGATCAGAACTT
CAGAAGCTGAGCATCTACCGGTTTGTTCCTGAACCTGTTGCCCTTTTCCTGGAACCTGCCTCTTGTTGCTACCTTACACT
GAAGAAACGTACTGTAGTAGTCTCTTGCTACGTGTGTTGTGTTTGTGTGAAGTAACAGTGTGTTTCTACATGTCGAAACT
CGAAACTATGTGTTGTCCTTGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis