Browse Element(s) Details


OsAffx.16657.1.S1_at

Description tigr:9635.m04061
TID=OsAffx.16657.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g406406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40630Os.27488.1.S1_at10/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40630OsAffx.11967.1.S1_x_at1/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40640OsAffx.16657.1.S1_at6/117+24354024..24355293expressed protein
LOC_Os07g40640Os.5141.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40640OsAffx.7500.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16657.1.S1_at--204--8897Chr09:12755675..12755699 (25 bp)
TGAGGCATCCGGCTGCGACCCGTCA
NONE
OsAffx.16657.1.S1_at--442--3792Chr12:12914204..12914682 (25 bp)
CTGCGACCCGTCACAGCGAGGTGGT
NONE
OsAffx.16657.1.S1_at--884--3291Chr07:24354593..24354615 (23 bp)
CACAGCGAGGTGGTTCCAACGGCGA
LOC_Os07g40640
OsAffx.16657.1.S1_at--538--2551Chr07:24354428..24354450 (23 bp)
AACTGCCGGGTGCAGATCCGCCCAA
LOC_Os07g40640
OsAffx.16657.1.S1_at--855--3431NONE
CAGATCCGCCCAAGGCGAAGAGGGC
NONE
OsAffx.16657.1.S1_at--936--2651Chr07:24354184..24354319 (25 bp)
AAGCCCATCGTGATTATTCCTCTTG
LOC_Os07g40640
OsAffx.16657.1.S1_at--91--7411Chr07:24354175..24354197 (23 bp)
GTGATTATTCCTCTTGTGAAGGCAT
LOC_Os07g40640
OsAffx.16657.1.S1_at--226--10271NONE
TTTGTTGCTCGTCAGATGGCTTTTC
NONE
OsAffx.16657.1.S1_at--1124--851Chr07:24353306..24353330 (25 bp)
ATGGCTTTTCGGGTGTGGCTTACAT
NONE
OsAffx.16657.1.S1_at--11--3991Chr07:24353297..24353321 (25 bp)
CGGGTGTGGCTTACATGAGTTTTCA
NONE
OsAffx.16657.1.S1_at--493--8731Chr07:24353282..24353306 (25 bp)
TGAGTTTTCACATAGGTTAAGTTCC
NONE
Target Sequence 
TGAGGCATCCGGCTGCGACCCGTCACAGCGAGGTGGTTCCAACGGCGAGCGGCAGTTCGGCGGCCTGCATCCTCGACCGC
GAGGAGGAGGTGAGCGGCGGCGCCGCGGCCTCAATCCCCGTCCGCCTGGCGCCGGATCCGTCGTCCTCAACTGCCGGGCG
TCGTCTCCTCCGTCCGCCGGCTGCGTCCCCAACTGCCGGGTGCAGATCCGCCCAAGGCGAAGAGGGCGGCGTCGAGCAGC
AATGGGGACGAGGTCGCCTCCAGACCGAGCTCAAGAAGGTCCAGCATGCCAAGGAGTTCAAGCCCATCGTGATTATTCCT
CTTGTGAAGGCATTGATCGAGAAAGACAAGGAAGGAGAGAAGAAGAAGGGCACCTTCGTTTTTTTTTTGTTGCTCGTCAG
ATGGCTTTTCGGGTGTGGCTTACATGAGTTTTCACATAGGTTAAGTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16657.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis