Browse Element(s) Details


Os.27488.1.S1_at

Description gb:AK120815.1
DB_XREF= gi:37990438
TID=Os.27488.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27488 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014N07, full insert sequence.
FL= gb:AK120815.1 gb:AK119897.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4063010/11leucine-rich repeat transmembrane protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40590Os.31312.1.S1_at6/117+24321692..24325314retrotransposon protein, putative, unclassified
LOC_Os07g40600NANA7+24327386..24328414retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g40610NANA7+24328754..24334910retrotransposon protein, putative, unclassified
LOC_Os07g40620Os.11328.1.S1_at11/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620OsAffx.28164.2.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.46481.2.S1_x_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40620Os.27137.1.S1_at1/117+24339496..24344274saccharopine dehydrogenase family protein, expressed
LOC_Os07g40630Os.27488.1.S1_at10/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40630OsAffx.11967.1.S1_x_at1/117+24346204..24350141leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os07g40640OsAffx.16657.1.S1_at6/117+24354024..24355293expressed protein
LOC_Os07g40640Os.5141.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40640OsAffx.7500.1.S1_at1/117+24354024..24355293expressed protein
LOC_Os07g40650Os.35344.18.S1_x_at11/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650Os.35344.3.S1_x_at9/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40650OsAffx.22940.5.S1_x_at3/117+24360821..24366869transposon protein, putative, Mutator sub-class
LOC_Os07g40660NANA7+24368962..24369348D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain containing protein
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009729biological_processdetection of brassinosteroid stimulus
GO:0009742biological_processbrassinosteroid mediated signaling
GO:0009826biological_processunidimensional cell growth
GO:0005739cellular_componentmitochondrion
GO:0005768cellular_componentendosome
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0042803molecular_functionprotein homodimerization activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27488.1.S1_at--114--8351Chr07:24346524..24346548 (25 bp)
GGCGGCGAGTAAGCAAACAAGCTCA
LOC_Os07g40630
Os.27488.1.S1_at--110--2211Chr07:24346508..24346532 (25 bp)
ACAAGCTCACATAGTCAACGTAGGT
LOC_Os07g40630
Os.27488.1.S1_at--665--451Chr07:24346471..24346495 (25 bp)
ATCTCACCAACAAACAATTCTTCTT
LOC_Os07g40630
Os.27488.1.S1_at--168--9991Chr07:24346392..24346416 (25 bp)
TAGCCCCAATTCTTGATGTGAATAA
LOC_Os07g40630
Os.27488.1.S1_at--474--8571Chr07:24346334..24346358 (25 bp)
TGGTTGTATCCATCACATTCTCCCC
LOC_Os07g40630
Os.27488.1.S1_at--534--10051Chr07:24346289..24346313 (25 bp)
TAGTTCAAGCACAACAATCTTTTTT
LOC_Os07g40630
Os.27488.1.S1_at--1156--9791Chr07:24346265..24346289 (25 bp)
TTTCTCCCGTTGTGTTCTTCTCCCA
LOC_Os07g40630
Os.27488.1.S1_at--232--2171Chr07:24346241..24346265 (25 bp)
ACACCACCTCATGCGGAAGACAGAT
LOC_Os07g40630
Os.27488.1.S1_at--396--8191Chr07:24346227..24346251 (25 bp)
GGAAGACAGATTCCGATCACTCGAG
LOC_Os07g40630
Os.27488.1.S1_at--24--6591Chr07:24346219..24346243 (25 bp)
GATTCCGATCACTCGAGAGGACATT
LOC_Os07g40630
Os.27488.1.S1_at--1159--1311Chr07:24346204..24346228 (25 bp)
AGAGGACATTCTCTCGCATTCAATT
NONE
Target Sequence 
GGCGGCGAGTAAGCAAACAAGCTCACATAGTCAACGTAGGTGTAGATAAAAAAATCTCACCAACAAACAATTCTTCTTTT
TTTCTTCGTACAAAATTTTGTTTCCAAAATCTCTTTTTTTTCCCTTTAATTTTAGCCCCAATTCTTGATGTGAATAACAC
AAGTAGGATCATCAAAAGAGAAGCAAATTNTGGTTGTATCCATCACATTCTCCCCCACAATGTAAATGCATTCANTAGTT
CAAGCACAACAATCTTTTTTTTCTCCCGTTGTGTTCTTCTCCCACACCACCTCATGCGGAAGACAGATTCCGATCACTCG
AGAGGACATTCTCTCGCATTCAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis