Browse Element(s) Details


Os.5749.1.S1_at

Description gb:AK102026.1
DB_XREF= gi:32987235
TID=Os.5749.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033080M18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033080M18, full insert sequence.
FL= gb:AK102026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1411011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g14050NANA12+7970017..7973194hypothetical protein
LOC_Os12g14060NANA12+7977265..7977936retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g14070Os.7977.1.S1_at11/1112+7983582..7989353Stromal 70 kDa heat shock-related protein, chloroplast precursor, putative, expressed
LOC_Os12g14080Os.12353.1.S1_at11/1112+7990304..7992128expressed protein
LOC_Os12g14090OsAffx.19661.1.S1_at11/1112+7992805..7994128hypothetical protein
LOC_Os12g14100Os.52989.1.S1_at11/1112+7994789..7997771lysine and histidine specific transporter, putative, expressed
LOC_Os12g14110Os.5749.1.S1_at11/1112+7997904..8001880expressed protein
LOC_Os12g14120Os.27639.1.S1_x_at1/1112+8009233..8012987retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g14140Os.53747.1.S1_at11/1112+8022569..8024801expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5749.1.S1_at--1147--5151Chr12:7998451..7998559 (25 bp)
GCAAGCTTTAGTGCAACGGGAGGCT
LOC_Os12g14110
Os.5749.1.S1_at--1156--1571Chr12:7998389..7998413 (25 bp)
AGCTCGACCCGTTTGCGGCGATCCA
LOC_Os12g14110
Os.5749.1.S1_at--112--6371Chr12:7998370..7998394 (25 bp)
GATCCATCAGCACCTGTTGTCAACA
LOC_Os12g14110
Os.5749.1.S1_at--738--3371Chr12:7998345..7998369 (25 bp)
CAGCCACCCTCTGCGAGAAAGGAGA
LOC_Os12g14110
Os.5749.1.S1_at--824--4291Chr12:7998179..7998203 (25 bp)
CCTCAGTTTGAAATCGTGTGATCTC
LOC_Os12g14110
Os.5749.1.S1_at--1005--3971Chr12:7998165..7998189 (25 bp)
CGTGTGATCTCTTAAACCTTGTCAA
LOC_Os12g14110
Os.5749.1.S1_at--313--2251Chr12:7998142..7998166 (25 bp)
AAATTCTGTTTCAGCATCGGCACTC
LOC_Os12g14110
Os.5749.1.S1_at--1024--3291Chr12:7998092..7998116 (25 bp)
CAAATTTTGTTTCAGCGTCGGCTCT
LOC_Os12g14110
Os.5749.1.S1_at--999--4591Chr12:7997977..7998001 (25 bp)
GCGAACTGCTTGTAGCGTGGCTGAA
LOC_Os12g14110
Os.5749.1.S1_at--686--3991Chr12:7997962..7997986 (25 bp)
CGTGGCTGAAGTTTCTTTGTGCTGA
LOC_Os12g14110
Os.5749.1.S1_at--426--3691Chr12:7997948..7997972 (25 bp)
CTTTGTGCTGATTTGTACATATGAT
LOC_Os12g14110
Target Sequence 
GCAAGCTTTAGTGCAACGGGAGGCTNGCCCAACTGAATGCTGTGCTNGACCAATCCGCAGTTCCAGCTCGACCCGTTTGC
GGCGATCCATCAGCACCTGTTGTCAACACAGCCACCCTCTGCGAGAAAGGAGAGCAATTCCGCCAAGCAGGGGAAGGACC
CTAAGGNCAAGAAAAGAAAGAACAAGAAGAAGAATGCTTCNTCGGCCTCCGAGGCAATGGATATCTGATATGGCAAAGTA
CCCTACCAAAGGAATGGGGCGCAATTATCGTCAACCTCAGTTTGAAATCGTGTGATCTCTTAAACCTTGTCAAATTCTGT
TTCAGCATCGGCACTCTCCTCCCAGAGGTGTGAGGTTGGGTCAAATTTTGTTTCAGCGTCGGCTCTCNCTCAGGTTTTTT
TTTTGACGGAAAAACAGTTGGAGAGGCTCCTACTGCAATATATTACTTGAGTGTACAANAGACTTTACCTCCTCCCAGCG
AACTGCTTGTAGCGTGGCTGAAGTTTCTTTGTGCTGATTTGTACATATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis