Browse Element(s) Details


Os.57507.1.S1_x_at

Description gb:AA752929
DB_XREF= gi:2799940
DB_XREF=97AS0672
CLONE=97AS0672
TID=Os.57507.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57507 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica putative glutathione S-transferase OsGSTU16 mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3415010/11Glutathione S-transferase, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34130Os.51788.2.S1_at11/115+20095069..20095865expressed protein
LOC_Os05g34140NANA5+20098495..20102020retrotransposon protein, putative, unclassified
LOC_Os05g34150Os.57507.1.S1_x_at10/115+20109210..20110617Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os05g34160Os.50748.1.S1_at10/115+20113860..20115430mTERF family protein, expressed
LOC_Os05g34170Os.45929.1.S1_at11/115+20120976..20124254Tubulin beta-6 chain, putative, expressed
LOC_Os05g34180Os.18877.1.S1_at11/115+20127170..20130433Isopentenyl-diphosphate delta-isomerase II, putative, expressed
LOC_Os05g34190Os.40855.4.S1_x_at1/115+20133326..20136837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009407biological_processtoxin catabolism
GO:0005737cellular_componentcytoplasm
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57507.1.S1_x_at--418--10071Chr05:20110559..20110583 (25 bp)
TAGTCCAGTCTCCAGTGTCACTCGA
LOC_Os05g34150
Os.57507.1.S1_x_at--131--1111Chr05:20110546..20110570 (25 bp)
AGTGTCACTCGACCAGAGCACTCAG
LOC_Os05g34150
Os.57507.1.S1_x_at--23--5951Chr05:20110531..20110555 (25 bp)
GAGCACTCAGCTGGGTAGTATTTGA
LOC_Os05g34150
Os.57507.1.S1_x_at--1096--5291Chr05:20110508..20110532 (25 bp)
GAAGGTAATTTTACTTCCTCTCGTG
LOC_Os05g34150
Os.57507.1.S1_x_at--526--9891Chr05:20110497..20110521 (25 bp)
TACTTCCTCTCGTGGCTATGGAGAA
LOC_Os05g34150
Os.57507.1.S1_x_at--6--4091Chr05:20110422..20110446 (25 bp)
CGAGCTCGTACACGCACCGGGTGCA
LOC_Os05g34150
Os.57507.1.S1_x_at--747--3731Chr05:20110384..20110408 (25 bp)
CTCAAGGCGCTGGAGTTCGTGTACG
LOC_Os05g34150
Os.57507.1.S1_x_at--388--10611Chr05:20110369..20110393 (25 bp)
TTCGTGTACGCCGAGGAGGACCTCG
LOC_Os05g34150
Os.57507.1.S1_x_at--205--10611Chr05:20110168..20110192 (25 bp)
TTCTGGTGCCACTTCGCCGACGATA
LOC_Os05g34150
Os.57507.1.S1_x_at--569--10631Chr05:20110086..20110180 (25 bp)
TTCGCCGACGATAAGCTTGGGCCGG
LOC_Os05g34150
Os.57507.1.S1_x_at--1043--9051NONE
TGCATCAGGTGCACGACAACCTTGG
NONE
Target Sequence 
TAGTCCAGTCTCCAGTGTCACTCGACCAGAGCACTCAGCTGGGTAGTATTTGAAGGTAATTTTACTTCCTCTCGTGGCTA
TGGAGAAGCAGGAGAACGGAGGGGAGGCGCCGGAGCTGAAGCTGTTCGGGTCGTGGGCGAGCTCGTACACGCACCGGGTG
CAGCTGGCGCTNCGGCTCAAGGCGCTGGAGTTCGTGTACGCCGAGGAGGACCTCGGNNACAAGAGCGAGGCGCTGCTGCN
CCTCAACCCGGTGCACAAGAAGGTCCCCGTGCTCGTCCACCGCGGCCGCCCGCTCGCCGAGTCCGTCATCATCCTCCAGT
ACCTCGACGACGCCTGGCCGGAGAGCCGCCCCCTCCTCCCCTCCGACCCCTTCTTANCCTGCGCCCTCGCTCGCTTCTGG
TGCCACTTCGCCGACGATAAGCTTGGGCCGGCCGGTTGGGGGCGGTGNTCGCGTGACGGGGAGGACAGAGCCGGCGGTGC
ATCAGGTGCACGACAACCTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57507.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis