Browse Element(s) Details


Os.57514.1.S1_x_at

Description gb:AF467734.1
DB_XREF= gi:18698673
TID=Os.57514.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.57514 (NCBI UniGene Cluster)
UG_TITLE=Putative myb protein mRNA, partial cds
DEF=Oryza sativa putative myb protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g653707/11Myb-like DNA-binding domain containing protein
LOC_Os11g078902/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g076402/11MYB10, putative, expressed
LOC_Os05g355002/11MYB6, putative, expressed
LOC_Os09g236201/11typical P-type R2R3 Myb protein, putative, expressed
LOC_Os01g074301/11Myb-like DNA-binding domain containing protein
LOC_Os02g405301/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g465601/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os08g379701/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g049001/11Myb-like DNA-binding domain containing protein
LOC_Os06g117801/11Myb-like DNA-binding domain containing protein
LOC_Os01g193301/11Cpm7, putative, expressed
LOC_Os06g022501/11Myb-like DNA-binding domain containing protein
LOC_Os06g146701/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g364601/11Myb-related protein Hv33, putative, expressed
LOC_Os03g191201/11P protein C-terminus containing protein
LOC_Os04g429501/11Myb protein, putative, expressed
LOC_Os05g466101/11Myb-related protein Hv33, putative, expressed
LOC_Os08g435501/11Myb-related protein Zm38, putative, expressed
LOC_Os01g037201/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os07g372101/11Myb-like DNA-binding domain containing protein, expressed
LOC_Os04g506801/11Myb-like DNA-binding domain containing protein
LOC_Os01g507201/11Myb-related protein Hv33, putative, expressed
LOC_Os03g382101/11Myb-like DNA-binding domain containing protein
LOC_Os08g331501/11MYB-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g65340OsAffx.9633.1.S1_at11/111+38237371..38238205hypothetical protein
LOC_Os01g65350Os.24883.1.S1_s_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.54011.1.S1_at11/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65350Os.27339.1.S1_at1/111+38241611..38245814deoxynucleoside kinase family, putative, expressed
LOC_Os01g65360OsAffx.23923.1.S1_at11/111+38254254..38256080hypothetical protein
LOC_Os01g65370Os.37103.1.S1_at11/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65370Os.57514.1.S1_x_at7/111+38259107..38260222Myb-like DNA-binding domain containing protein
LOC_Os01g65380Os.7053.1.S1_s_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65380Os.7053.1.S1_at11/111+38275729..38278807Patellin-5, putative, expressed
LOC_Os01g65400Os.24034.1.S1_a_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.3.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os01g65400Os.24034.2.S1_x_at11/111+38281940..382858505'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009411biological_processresponse to UV
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009651biological_processresponse to salt stress
GO:0009699biological_processphenylpropanoid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009800biological_processcinnamic acid biosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0009892biological_processnegative regulation of metabolism
GO:0010119biological_processregulation of stomatal movement
GO:0010214biological_processseed coat development
GO:0010224biological_processresponse to UV-B
GO:0016481biological_processnegative regulation of transcription
GO:0045449biological_processregulation of transcription
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005516molecular_functioncalmodulin binding
GO:0016563molecular_functiontranscriptional activator activity
GO:0016564molecular_functiontranscriptional repressor activity
GO:0016566molecular_functionspecific transcriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57514.1.S1_x_at--349--9331Chr01:38259208..38259232 (25 bp)
TCGCCATGCTGCGAGAAGGCGCACA
LOC_Os01g65370
Os.57514.1.S1_x_at--223--634Chr12:3840016..3840039 (24 bp)
ATGCTGCGAGAAGGCGCACACGAAC
LOC_Os12g07640
Os.57514.1.S1_x_at--1036--4351Chr01:38259264..38259288 (25 bp)
CCAGCGGCTGATCGCCTACATCAAG
LOC_Os01g65370
Os.57514.1.S1_x_at--611--9871Chr01:38259280..38259304 (25 bp)
TACATCAAGGCGCACGGCGAGGGTT
LOC_Os01g65370
Os.57514.1.S1_x_at--610--4171Chr01:38259446..38259552 (25 bp)
CCCTTCTCGGCAACAAGTGGTCGTT
LOC_Os01g65370
Os.57514.1.S1_x_at--207--61925Chr12:3840478..3840503 (25 bp)
GAGGACGGACACGAGATCAAGAACT
LOC_Os12g07640
Os.57514.1.S1_x_at--445--2091Chr01:38259612..38259637 (25 bp)
ACATCAAGCGCAAGCTCTGAGCCGG
LOC_Os01g65370
Os.57514.1.S1_x_at--543--7571NONE
GGGCTTACACGACGGCAACACCGCG
NONE
Os.57514.1.S1_x_at--693--5131NONE
GCAACACCGCGCTTTTCGTCCTTGG
NONE
Os.57514.1.S1_x_at--883--4211NONE
CCGCCGCCGAAGAAGACAGGCTAAA
NONE
Os.57514.1.S1_x_at--127--5351NONE
GAAGACAGGCTAAAACCCGGGCACG
NONE
Target Sequence 
TCGCCATGCTGCGAGAAGGCGCACACGAACAAGGGGGCGTGGACGAAGGAGGAGGACCAGCGGCTGATCGCCTACATCAA
GGCGCACGGCGAGGGTTGCTGGCGGTCGCTGCCCAAGGCGGCGGGGCTCCTCCGCTGCGGCAAGAGCTGCCGCCTCCGCT
GGATGAACTACCTCCGCCCCGACCTCAAGCGCGGCAACTTCACCGACGACGACGACGAGCTCATCATCAAGCTCCACGCC
CTTCTCGGCAACAAGTGGTCGTTGATTGCGGGGCAGCTGCCGGGAGGACGGACACGAGATCAAGAACTACTGGAACACGC
ACATCAAGCGCAAGCTCTGAGCCGGGGCATTGACCCGCAGACGCACCGGCCGGTCACGCCGGAACACGCCCCCCCGGGAA
AACGGGCTTACACGACGGCAACACCGCGCTTTTCGTCCTTGGCCCGGGGCCGCCGCCGAAGAAGACAGGCTAAAACCCGG
GCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57514.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis