Browse Element(s) Details


Os.57560.1.S1_at

Description gb:AB017914.1
DB_XREF= gi:4519257
GEN=DD2-3
TID=Os.57560.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57560 (NCBI UniGene Cluster)
DEF=Oryza sativa mRNA for L-zip+NBS+LRR, complete cds.
PROD=L-zip+NBS+LRR
FL= gb:AB017914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4209011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g42060OsAffx.31435.1.S1_at11/1111+24814749..24816695Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.2.S1_x_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42070Os.50426.1.S1_at11/1111+24819969..24824125Leucine Rich Repeat family protein, expressed
LOC_Os11g42080Os.54118.1.A1_at2/1111+24832078..24834273expressed protein
LOC_Os11g42090Os.57560.1.S1_at11/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42090OsAffx.1238.1.S1_at1/1111+24837528..24843993Leucine Rich Repeat family protein, expressed
LOC_Os11g42100OsAffx.19324.1.S1_at11/1111+24857003..24859425Leucine Rich Repeat family protein, expressed
LOC_Os11g42110NANA11+24860073..24860558hypothetical protein
LOC_Os11g42120OsAffx.19326.1.S1_at11/1111+24866925..24867314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57560.1.S1_at--565--5891Chr11:24841097..24841121 (25 bp)
GAGCTGGAATCTTCTTCTAACTTTG
LOC_Os11g42090
Os.57560.1.S1_at--997--1051Chr11:24841072..24841096 (25 bp)
AGGGTTTGCAAGATCTCGCCAGGCT
LOC_Os11g42090
Os.57560.1.S1_at--1127--3791Chr11:24841007..24841031 (25 bp)
CTCCCGCAAGGTCTGCAACATATTT
LOC_Os11g42090
Os.57560.1.S1_at--65--3251Chr11:24840914..24840938 (25 bp)
CAACCTTCTCTCCAAGTTATACGTT
LOC_Os11g42090
Os.57560.1.S1_at--1124--1191Chr11:24840900..24840924 (25 bp)
AGTTATACGTTTGTCGGGCTGTCCT
LOC_Os11g42090
Os.57560.1.S1_at--873--3811Chr11:24840877..24840901 (25 bp)
CTGCGCTACATTCTATTTCCGAAGG
LOC_Os11g42090
Os.57560.1.S1_at--64--211Chr11:24840863..24840887 (25 bp)
ATTTCCGAAGGCTTGCTACGTGGCA
LOC_Os11g42090
Os.57560.1.S1_at--1041--9871Chr11:24840826..24840850 (25 bp)
TACATATGAATGACTGCCCCAATTT
LOC_Os11g42090
Os.57560.1.S1_at--204--1711Chr11:24837711..24837735 (25 bp)
ACCATCCTTGGAAACACCTTACTTG
LOC_Os11g42090
Os.57560.1.S1_at--125--6211Chr11:24837634..24837658 (25 bp)
GAGGCACCACGTTTCCTAATGTTAA
LOC_Os11g42090
Os.57560.1.S1_at--948--10474Chr10:16902183..16902204 (22 bp)
TTAAAACTAGCTGGGTGGCTCGCGC
NONE
Target Sequence 
GAGCTGGAATCTTCTTCTAACTTTGAGGGTTTGCAAGATCTCGCCAGGCTCAAGAAGTTAAACATATGCGGGTGTCATGA
GCTGACATGCCTCCCGCAAGGTCTGCAACATATTTCTTCTATTAGAAGCTTGGCAATTGACAATTGCAACAAACTGGAGA
CTTTACCAGAATGGTTAGAGCACCAACCTTCTCTCCAAGTTATACGTTTGTCGGGCTGTCCTGCGCTACATTCTATTTCC
GAAGGCTTGCTACGTGGCAACAGTATCGAAATACATATGAATGACTGCCCCAATTTGACAGAACAATCATCAGGAGGATA
TTCTACTACTCAAGTCAAGAAGCACAAAGAAATCATTCGGCTTGTTGAAGAAACCATCAGTGAAGATGACTATACCATCC
TTGGAAACACCTTACTTGAAGATGATACTTATCTAGAGGAGGCTTTTTTTGGTGCTCGAGTAGATACTAGGAGGCACCAC
GTTTCCTAATGTTAATAGAACATGGGCATGTTTGGATGTACTTAATGTTAATCTTATTAAAACTAGCTGGGTGGCTCGCG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis