Browse Element(s) Details


Os.57571.1.S1_at

Description gb:AK062485.1
DB_XREF= gi:32972503
TID=Os.57571.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57571 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-G09, full insert sequence.
FL= gb:AK062485.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g127393/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12720Os.10898.1.S1_at11/113+6765827..6769260expressed protein
LOC_Os03g12730Os.18287.1.S1_at11/113+6783729..6787461Receptor protein kinase CLAVATA1 precursor, putative, expressed
LOC_Os03g12739Os.57571.1.S1_at3/113+6793945..6794535NA
LOC_Os03g12750OsAffx.25074.1.S1_at9/113+6795264..6798259hypothetical protein
LOC_Os03g12750Os.57571.1.S2_at4/113+6795264..6798259hypothetical protein
LOC_Os03g12760OsAffx.24595.3.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_x_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.2.S1_at11/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein
LOC_Os03g12760OsAffx.24595.1.S1_s_at7/113+6805818..6811267Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57571.1.S1_at--559--4931Chr02:10944508..10944532 (25 bp)
GCATAGTCTGCCGTAGGTACTTCCA
NONE
Os.57571.1.S1_at--105--10092Chr03:9940142..9940210 (25 bp)
TAGGTACTTCCAGCCGTGCGTCAAA
NONE
Os.57571.1.S1_at--1015--1671Chr02:10944484..10944508 (25 bp)
AGCCGTGCGTCAAAATTTCTTCTGC
NONE
Os.57571.1.S1_at--268--3132Chr03:9940166..9940190 (25 bp)
AATTTCTTCTGCTGGTGAGATCGAG
NONE
Os.57571.1.S1_at--1157--8892Chr03:9940181..9940205 (25 bp)
TGAGATCGAGTGAGACCCCATTGAC
NONE
Os.57571.1.S1_at--570--2233Chr03:9940208..9940232 (25 bp)
AAATTGACTCTTCTGAATCCCCATT
NONE
Os.57571.1.S1_at--1124--8993Chr03:9940221..9940245 (25 bp)
TGAATCCCCATTAGTCTTCTGTGTG
NONE
Os.57571.1.S1_at--971--1153Chr03:9940233..9940257 (25 bp)
AGTCTTCTGTGTGGATTCTTATTCA
NONE
Os.57571.1.S1_at--632--7751Chr02:10944274..10944298 (25 bp)
GGTGTTGCTCCATTCAGACTAACAT
NONE
Os.57571.1.S1_at--588--10033Chr03:6794533..6794554 (22 bp)
TAGACTTGTAGTTGCCATGCTGCGT
NONE
Os.57571.1.S1_at--35--6492Chr03:9941033..9941056 (24 bp)
GATACTGCATTCCACCATTTGATTT
NONE
Target Sequence 
GCATAGTCTGCCGTAGGTACTTCCAGCCGTGCGTCAAAATTTCTTCTGCTGGTGAGATCGAGTGAGACCCCATTGACTCA
AATTGACTCTTCTGAATCCCCATTAGTCTTCTGTGTGGATTCTTATTCAGCTGAAGGGCTATATCCTATCAAGGTGACTG
GTGTTGCTCCATTCAGACTAACATTGTAGACTTGTAGTTGCCATGCTGCGTCTCTTCCAGATTACTTTATAGAGAAATTA
TATTGTACAGGTTTGAGAATTGTTCAAGTGATACTGCATTCCACCATTTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57571.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis