Browse Element(s) Details


Os.5802.1.S1_at

Description gb:AK069852.1
DB_XREF= gi:32979876
TID=Os.5802.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036I06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036I06, full insert sequence.
FL= gb:AK069852.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1476011/11RNA-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14730Os.17306.1.S1_at11/112+8136541..8143468Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os02g14740NANA2+8151391..8151966hypothetical protein
LOC_Os02g14750NANA2+8157598..8158715hypothetical protein
LOC_Os02g14760Os.5802.1.S1_at11/112+8164660..8169144RNA-binding protein, putative, expressed
LOC_Os02g14770Os.2450.3.S1_x_at11/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770Os.2450.1.S1_a_at10/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.29538.2.S1_s_at8/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed
LOC_Os02g14770OsAffx.18275.1.A1_at1/112+8172420..8184166Phosphoenolpyruvate carboxylase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003723molecular_functionRNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5802.1.S1_at--482--10871Chr02:8168561..8168676 (25 bp)
TTGGCACACTTCCTATCAGGGTGAG
LOC_Os02g14760
Os.5802.1.S1_at--662--7231Chr02:8168704..8168728 (25 bp)
GTCGCCTCGCGTGATGTCAAACTGA
LOC_Os02g14760
Os.5802.1.S1_at--1033--2551Chr02:8168723..8168747 (25 bp)
AACTGAGTCCGGGTTGTTCCTGAAG
LOC_Os02g14760
Os.5802.1.S1_at--630--2711Chr02:8168745..8168769 (25 bp)
AAGCTTGAGGCTGTCACCAATGGCA
LOC_Os02g14760
Os.5802.1.S1_at--838--10431Chr02:8168799..8168823 (25 bp)
TTAGAAATGCTGTCGCTTCGCGGAA
LOC_Os02g14760
Os.5802.1.S1_at--1087--9431Chr02:8168824..8168848 (25 bp)
TCGGTAACTGCCGTTTCTGAGAGTA
LOC_Os02g14760
Os.5802.1.S1_at--22--6911Chr02:8168846..8168870 (25 bp)
GTATCATCTCATCATCTCTTAGGTC
LOC_Os02g14760
Os.5802.1.S1_at--983--6271Chr02:8168892..8168916 (25 bp)
GATGTTCGTCTGTTCAGAGACCCAT
LOC_Os02g14760
Os.5802.1.S1_at--354--7651Chr02:8168926..8168950 (25 bp)
GGGAGAGGCTACATTTTCGTTTCTT
LOC_Os02g14760
Os.5802.1.S1_at--135--3451Chr02:8168970..8168994 (25 bp)
CAGTATCCTATAACAGCCTTTGCAG
LOC_Os02g14760
Os.5802.1.S1_at--410--10391Chr02:8169021..8169045 (25 bp)
TTTTCTGTCTCATTCACACTGTTCA
LOC_Os02g14760
Target Sequence 
TTGGCACACTTCCTATCAGGGTGAGCCCTTCCAAGACACCCGTGCGTCCGCGGTCGCCTCGCGTGATGTCAAACTGAGTC
CGGGTTGTTCCTGAAGCTTGAGGCTGTCACCAATGGCAGGCAGAGCTTGAAACTCTAGTCATGGCGTTTAGAAATGCTGT
CGCTTCGCGGAATCGGTAACTGCCGTTTCTGAGAGTATCATCTCATCATCTCTTAGGTCCAAGTAGAAGGCCGACCTGCT
GATGTTCGTCTGTTCAGAGACCCATCTGTAGGTTGGGAGAGGCTACATTTTCGTTTCTTTTGTTCAGTATGCTATGTTCA
GTATCCTATAACAGCCTTTGCAGGCAATTCCGACAATAATATCTACGTATTTTCTGTCTCATTCACACTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5802.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis