Browse Element(s) Details


Os.5805.1.S1_at

Description gb:AK068450.1
DB_XREF= gi:32978468
TID=Os.5805.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5805 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151M13, full insert sequence.
FL= gb:AK068450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3988011/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39850Os.13008.2.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.2.S1_x_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.13008.1.S1_at11/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39850Os.6901.1.S1_at1/118+25108194..25117436lipoxygenase 8, chloroplast precursor, putative, expressed
LOC_Os08g39860Os.17880.1.S1_a_at11/118+25117486..25121813Non-cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os08g39870Os.7762.1.S1_at10/118+25127286..25134092Glycosyl hydrolase family 1 protein, expressed
LOC_Os08g39880Os.5805.1.S1_at11/118+25137215..25140785G-patch domain containing protein, expressed
LOC_Os08g39890Os.6636.1.S1_at10/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39890OsAffx.2442.1.S1_x_at1/118+25141631..25145853SBP-domain protein 5, putative, expressed
LOC_Os08g39900OsAffx.6089.1.S1_at11/118+25148126..25148752hypothetical protein
LOC_Os08g39910Os.27691.1.S1_x_at3/118+25157104..25160098retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.2.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g39920Os.27691.1.S1_x_at2/118+25160347..25161312retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5805.1.S1_at--489--6311Chr08:25140028..25140052 (25 bp)
GATGACCATTAATTCGCTGTGTCTG
LOC_Os08g39880
Os.5805.1.S1_at--830--3271Chr08:25140059..25140083 (25 bp)
CAAAGAATGGTCCTTGTTACAACAG
LOC_Os08g39880
Os.5805.1.S1_at--316--4711Chr08:25140271..25140295 (25 bp)
GCTGTAAACGATATTTTGGGACCTA
LOC_Os08g39880
Os.5805.1.S1_at--903--10831Chr08:25140286..25140310 (25 bp)
TTGGGACCTATACTGCGAATCACCT
LOC_Os08g39880
Os.5805.1.S1_at--397--3371Chr08:25140306..25140330 (25 bp)
CACCTTTCACATTTCAGTATCACAT
LOC_Os08g39880
Os.5805.1.S1_at--254--711Chr08:25140344..25140368 (25 bp)
ATGATAATTCTCTTGCGGCAGCTTA
LOC_Os08g39880
Os.5805.1.S1_at--737--6911Chr08:25140424..25140448 (25 bp)
GTATGCTCTGCTCCTCCATGTAGAA
LOC_Os08g39880
Os.5805.1.S1_at--943--2851Chr08:25140482..25140506 (25 bp)
AAGTCCAAATCAAGGTGCCTCTCCT
LOC_Os08g39880
Os.5805.1.S1_at--662--3091Chr08:25140677..25140701 (25 bp)
AATACATCATACACCTGTTGCTGGG
LOC_Os08g39880
Os.5805.1.S1_at--466--2211Chr08:25140729..25140753 (25 bp)
ACAACTGTGTCAAATCTTGCATGTG
LOC_Os08g39880
Os.5805.1.S1_at--221--2811Chr08:25140759..25140783 (25 bp)
AAGATCCATAATCACTGTTTGCTGA
LOC_Os08g39880
Target Sequence 
GATGACCATTAATTCGCTGTGTCTGGGGCAACAAAGAATGGTCCTTGTTACAACAGGATTTGCAAGTTGCTGTAAACGAT
ATTTTGGGACCTATACTGCGAATCACCTTTCACATTTCAGTATCACATCTCAATGTTAGAAATGATAATTCTCTTGCGGC
AGCTTAAAGCTACAAGGGTGGAACTGGAAAGCTTCAGGAAGAGTTTACAGTTCTGCATATGGTATGCTCTGCTCCTCCAT
GTAGAAGGCTTCAAAGGAGCCCNTGCTACAGCTCTTNAAAAGTCCAAATCAAGGTGCCTCTCCTCNCAGTGAAAAANAGT
CGTGTCAATGGAACAAGTGATNTGCGACATATGATAATGATAAGCAGATGGCGCCAAAGCAATTATACATTTNTGTTTTC
CAATCNCGGTGATAACTGTTCAAGTTGGTAGTACTGTGTTTAGGATGGCNCTGATATTTTTGATTCATTCTAGCAATACA
TCATACACCTGTTGCTGGGNTCTATCTTCAATGCAATGATGGTTTTACAACTGTGTCAAATCTTGCATGTGACATTAAGA
TCCATAATCACTGTTTGCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5805.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis