Browse Element(s) Details


Os.5842.1.S1_at

Description gb:AK071030.1
DB_XREF= gi:32981053
TID=Os.5842.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5842 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075N19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075N19, full insert sequence.
FL= gb:AK071030.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1903011/11copine, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g18990NANA12+11020707..11021345retrotransposon protein, putative, unclassified
LOC_Os12g19000NANA12+11023499..11029196retrotransposon protein, putative, unclassified
LOC_Os12g19010Os.28943.1.S1_x_at1/1112+11030520..11032989retrotransposon protein, putative, unclassified
LOC_Os12g19030Os.5842.1.S1_at11/1112+11043065..11054480copine, putative, expressed
LOC_Os12g19040Os.8992.1.S1_at11/1112+11058093..11070851expressed protein
LOC_Os12g19040OsAffx.19738.1.S1_at10/1112+11058093..11070851expressed protein
LOC_Os12g19040Os.50619.1.S1_at1/1112+11058093..11070851expressed protein
LOC_Os12g19070OsAffx.31805.1.S1_at10/1112+11072938..11073902hypothetical protein
LOC_Os12g19080OsAffx.19739.1.S1_at11/1112+11076761..11077419hypothetical protein
LOC_Os12g19090Os.28791.1.A1_at4/1112+11078499..11081000kub3-prov protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5842.1.S1_at--589--9191Chr12:11043714..11043738 (25 bp)
TCCAAACCCCGGGACATGGCTTTTG
LOC_Os12g19030
Os.5842.1.S1_at--10--8131Chr12:11043703..11043727 (25 bp)
GGACATGGCTTTTGGTTGCGGACAC
LOC_Os12g19030
Os.5842.1.S1_at--38--6671Chr12:11043608..11043713 (25 bp)
GTTGCGGACACCAGACATGTGCTGA
LOC_Os12g19030
Os.5842.1.S1_at--281--5671Chr12:11043595..11043619 (25 bp)
GACATGTGCTGAATGTGGACCGCAA
LOC_Os12g19030
Os.5842.1.S1_at--656--5811Chr12:11043578..11043602 (25 bp)
GACCGCAAGTCGAACATTGCCCTAT
LOC_Os12g19030
Os.5842.1.S1_at--198--71Chr12:11043563..11043587 (25 bp)
ATTGCCCTATCTGTCGAAGGCCAAT
LOC_Os12g19030
Os.5842.1.S1_at--395--3491Chr12:11043467..11043491 (25 bp)
CATGGAGGACTCTAATAGGCTGTTA
LOC_Os12g19030
Os.5842.1.S1_at--657--9571Chr12:11043374..11043398 (25 bp)
TCTTCTGATGTAGGTGTGGTGAGTT
LOC_Os12g19030
Os.5842.1.S1_at--179--8171Chr12:11043162..11043185 (24 bp)
GGAAAATTCCCAGCTTCATGTATTG
LOC_Os12g19030
Os.5842.1.S1_at--83--2491Chr12:11043111..11043135 (25 bp)
AACAGCTACAGTACAGCGGCACGAC
LOC_Os12g19030
Os.5842.1.S1_at--324--9871Chr12:11043100..11043124 (25 bp)
TACAGCGGCACGACACTAGGAAAGT
LOC_Os12g19030
Target Sequence 
TCCAAACCCCGGGACATGGCTTTTGGTTGCGGACACCAGACATGTGCTGAATGTGGACCGCAAGTCGAACATTGCCCTAT
CTGTCGAAGGCCAATTGATACAAGAGTAAAACTGTACTAATTTCACCATCTGTGATGCATAAAAGGTTTTCGTCGAAGGC
CGCATCCATGGAGGACTCTAATAGGCTGTTATAGGAGTGCAGTATGTACTAATGTTGATAAAAGATAGCGGTCAAATAAT
CACAATAAAACTTGTATCCTCTTCTGATGTAGGTGTGGTGAGTTAATTGTTATATTTGTCATTACAAGGAGTAACGGAAT
AATGTGGGACAGGGAGAAGTCACTTTGACTCCTTCCAGCTCTTCCAAATGGTTTACNCAGGAGGTATTCGAACGCTAACA
CGTTNGCCGCTGTAGGATACNGNGTTATATTTTTTTAAGAGGAATATGGTGCTTTCGATGCCNAATTAGGGAAGGAAAAT
TCCCAGCTTCATGTATTGGTTAATTGGTACANNTTGTAACTCGCAACAGCTACAGTACAGCGGCACGACACTAGGAAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis