Browse Element(s) Details


Os.8992.1.S1_at

Description gb:AK064558.1
DB_XREF= gi:32974576
TID=Os.8992.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8992 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-C07, full insert sequence.
FL= gb:AK064558.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1904011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19030Os.5842.1.S1_at11/1112+11043065..11054480copine, putative, expressed
LOC_Os12g19040Os.8992.1.S1_at11/1112+11058093..11070851expressed protein
LOC_Os12g19040OsAffx.19738.1.S1_at10/1112+11058093..11070851expressed protein
LOC_Os12g19040Os.50619.1.S1_at1/1112+11058093..11070851expressed protein
LOC_Os12g19070OsAffx.31805.1.S1_at10/1112+11072938..11073902hypothetical protein
LOC_Os12g19080OsAffx.19739.1.S1_at11/1112+11076761..11077419hypothetical protein
LOC_Os12g19090Os.28791.1.A1_at4/1112+11078499..11081000kub3-prov protein, putative, expressed
LOC_Os12g19100NANA12+11082221..11082810transposon protein, putative, unclassified
LOC_Os12g19110OsAffx.19741.1.S1_at11/1112+11088851..11089153hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8992.1.S1_at--805--7791Chr12:11058546..11058570 (25 bp)
GGTCGCAAATGACGAGCCTGCTGTT
LOC_Os12g19040
Os.8992.1.S1_at--836--7611Chr12:11058507..11058531 (25 bp)
GGGAACTTGGACACCAAATGCCAGT
LOC_Os12g19040
Os.8992.1.S1_at--91--4431Chr12:11058488..11058512 (25 bp)
GCCAGTACATCTGCTTGGTCATATA
LOC_Os12g19040
Os.8992.1.S1_at--744--3731Chr12:11058458..11058482 (25 bp)
CTAAGGAGCAGTGCCCTTGGTCCAA
LOC_Os12g19040
Os.8992.1.S1_at--596--7191Chr12:11058399..11058423 (25 bp)
GGGTAGACCTTACAATCGGAAGTAT
LOC_Os12g19040
Os.8992.1.S1_at--659--1011Chr12:11058366..11058390 (25 bp)
AGGTTGCTGTATGTAATCGCCGCTT
LOC_Os12g19040
Os.8992.1.S1_at--490--4131Chr12:11058346..11058370 (25 bp)
CGCTTGGCCTGTTCTTTTGTAGTTT
LOC_Os12g19040
Os.8992.1.S1_at--502--7931Chr12:11058292..11058316 (25 bp)
GGATTGCTATGTTACTGCCTGTTCA
LOC_Os12g19040
Os.8992.1.S1_at--121--5331Chr12:11058221..11058245 (25 bp)
GAAGGGTTCTAAACTGTTGAGCTCT
LOC_Os12g19040
Os.8992.1.S1_at--401--571Chr12:11058152..11058176 (25 bp)
ATGCCATTAGGCACCTGGTTGGTAA
LOC_Os12g19040
Os.8992.1.S1_at--459--2671Chr12:11058116..11058140 (25 bp)
AAGCGTTATTGGCAACGAGCTGCAA
LOC_Os12g19040
Target Sequence 
GGTCGCAAATGACGAGCCTGCTGTTCNAGGAAAATGGCTNGGGGAACTTGGACACCAAATGCCAGTACATCTGCTTGGTC
ATATAGAGCACTAAGGAGCAGTGCCCTTGGTCCAACACTTGCNACATTTGAGAGGAAAAAATACCAAGAGGGGTAGACCT
TACAATCGGAAGTATGGCAAGTGAGGTTGCTGTATGTAATCGCCGCTTGGCCTGTTCTTTTGTAGTTTTTGTTTGTATGT
AATGGTGGGCTGAGCTAGGATTGCTATGTTACTGCCTGTTCATGGCGATATGGGATCTGAATCTAAGACACCTAAATTAG
TCCCTAGAGAAGGGTTCTAAACTGTTGAGCTCTGACATTTATGTGAAACTGGAGTTCAACAAGTCTGTTAAAGATGGATG
CCATTAGGCACCTGGTTGGTAAGATTGCATTAGAAGCGTTATTGGCAACGAGCTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis