Browse Element(s) Details


OsAffx.19741.1.S1_at

Description tigr:9640.m01888
TID=OsAffx.19741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1911011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19040Os.8992.1.S1_at11/1112+11058093..11070851expressed protein
LOC_Os12g19040OsAffx.19738.1.S1_at10/1112+11058093..11070851expressed protein
LOC_Os12g19040Os.50619.1.S1_at1/1112+11058093..11070851expressed protein
LOC_Os12g19070OsAffx.31805.1.S1_at10/1112+11072938..11073902hypothetical protein
LOC_Os12g19080OsAffx.19739.1.S1_at11/1112+11076761..11077419hypothetical protein
LOC_Os12g19090Os.28791.1.A1_at4/1112+11078499..11081000kub3-prov protein, putative, expressed
LOC_Os12g19100NANA12+11082221..11082810transposon protein, putative, unclassified
LOC_Os12g19110OsAffx.19741.1.S1_at11/1112+11088851..11089153hypothetical protein
LOC_Os12g19120NANA12+11098252..11099511retrotransposon protein, putative, unclassified
LOC_Os12g19130Os.45212.1.S1_x_at3/1112+11103645..11105716retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19140OsAffx.25156.3.S1_at11/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.1.S1_x_at3/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.4.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.5.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.31777.1.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19150OsAffx.22947.2.S1_x_at6/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.1.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.3.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.5.S1_x_at2/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19741.1.S1_at--534--3271Chr12:11089074..11089098 (25 bp)
CAACAGCAACGGCTTGGAGCGGATC
LOC_Os12g19110
OsAffx.19741.1.S1_at--441--2151Chr12:11089072..11089096 (25 bp)
ACAGCAACGGCTTGGAGCGGATCCG
LOC_Os12g19110
OsAffx.19741.1.S1_at--739--3231Chr12:11089068..11089092 (25 bp)
CAACGGCTTGGAGCGGATCCGGCGT
LOC_Os12g19110
OsAffx.19741.1.S1_at--240--551Chr12:11089022..11089046 (25 bp)
ATCCACCGTTGCCGGACCTCGGGAG
LOC_Os12g19110
OsAffx.19741.1.S1_at--263--3951Chr12:11089010..11089034 (25 bp)
CGGACCTCGGGAGCGGCACAGGGAT
LOC_Os12g19110
OsAffx.19741.1.S1_at--70--4791Chr12:11088973..11088997 (25 bp)
GCTCTCAACGTCAGCTATACGGGGA
LOC_Os12g19110
OsAffx.19741.1.S1_at--291--871Chr12:11088942..11088966 (25 bp)
ATGGCGGTTCTCAGCGTCAGCGACG
LOC_Os12g19110
OsAffx.19741.1.S1_at--209--4691Chr12:11088939..11088963 (25 bp)
GCGGTTCTCAGCGTCAGCGACGTGA
LOC_Os12g19110
OsAffx.19741.1.S1_at--405--6731Chr12:11088936..11088960 (25 bp)
GTTCTCAGCGTCAGCGACGTGAGGA
LOC_Os12g19110
OsAffx.19741.1.S1_at--964--2671Chr12:11088900..11088924 (25 bp)
AAGCGGATCCCGCACCAGTGAGCCT
LOC_Os12g19110
OsAffx.19741.1.S1_at--222--4231Chr12:11088891..11088915 (25 bp)
CCGCACCAGTGAGCCTCGGGAGAGT
LOC_Os12g19110
Target Sequence 
CAACAGCAACGGCTTGGAGCGGATCCGGCGTCGACGAGCCTTGGGAGGGCGGATCCACCGTTGCCGGACCTCGGGAGCGG
CACAGGGATGGGGCGGCGGCAGCTCTCAACGTCAGCTATACGGGGAGGGGCGATGGCGGTTCTCAGCGTCAGCGACGTGA
GGAGGGGTGGCGGGAAGCGGATCCCGCACCAGTGAGCCTCGGGAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis