Browse Element(s) Details


OsAffx.25156.3.S1_at

Description tigr:9640.m01891
TID=OsAffx.25156.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1914011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19100NANA12+11082221..11082810transposon protein, putative, unclassified
LOC_Os12g19110OsAffx.19741.1.S1_at11/1112+11088851..11089153hypothetical protein
LOC_Os12g19120NANA12+11098252..11099511retrotransposon protein, putative, unclassified
LOC_Os12g19130Os.45212.1.S1_x_at3/1112+11103645..11105716retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19140OsAffx.25156.3.S1_at11/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.1.S1_x_at3/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.4.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.5.S1_x_at2/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.31777.1.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19140OsAffx.25156.2.S1_x_at1/1112+11106360..11110460hypothetical protein
LOC_Os12g19150OsAffx.22947.2.S1_x_at6/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.1.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.3.S1_x_at5/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19150OsAffx.22947.5.S1_x_at2/1112+11113099..11117409retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19160NANA12+11120452..11121387retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g19170NANA12+11130462..11130779hypothetical protein
LOC_Os12g19180Os.23221.1.A1_at11/1112+11135389..11138969expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25156.3.S1_at--413--2771Chr12:11106790..11107072 (25 bp)
AAGACCACCCTGAGCATGCGTTCAG
LOC_Os12g19140
OsAffx.25156.3.S1_at--946--4631Chr12:11106773..11106797 (25 bp)
GCGTTCAGCCGAAAGGTTTGCGTTC
LOC_Os12g19140
OsAffx.25156.3.S1_at--616--7311Chr12:11106623..11106647 (25 bp)
GTGTTCAAGGTCATCGGTTGGATGC
LOC_Os12g19140
OsAffx.25156.3.S1_at--490--5091Chr12:11106594..11106618 (25 bp)
GCACCCCGAGCAAACCATAGAAGAC
LOC_Os12g19140
OsAffx.25156.3.S1_at--67--5853Chr12:11106566..11106590 (25 bp)
GACCTTGTTCATACAAGACGACTGG
LOC_Os12g19140
OsAffx.25156.3.S1_at--821--5711Chr12:11106507..11106531 (25 bp)
GACTGATCGGCAGGATTTAATCTTC
LOC_Os12g19140
OsAffx.25156.3.S1_at--406--7931Chr12:11106495..11106519 (25 bp)
GGATTTAATCTTCCAGTGTCATTAC
LOC_Os12g19140
OsAffx.25156.3.S1_at--1096--10671Chr12:11106485..11106509 (25 bp)
TTCCAGTGTCATTACAGTCTAGTCT
LOC_Os12g19140
OsAffx.25156.3.S1_at--913--1155Chr12:11106470..11106494 (25 bp)
AGTCTAGTCTGTATTTCGCCTCCTT
LOC_Os12g19140
OsAffx.25156.3.S1_at--143--9313Chr12:11106446..11106470 (25 bp)
TCCCCTCTTAGGGTCGTGTATGATA
LOC_Os12g19140
OsAffx.25156.3.S1_at--472--10651Chr12:11106399..11106423 (25 bp)
TTCGCCTGATCTTCCCTTAGAGGGA
LOC_Os12g19140
Target Sequence 
AAGACCACCCTGAGCATGCGTTCAGCCGAAAGGTTTGCGTTCGACCTCCCGCGAAAAATTGGCGAAACAGCAACGAGAAG
TTCATGGCGTTGAAGGGTTTGCCGAAGGTGCGATGCCCATTTCGGCCTGTTTATCGCGAAATGGTGATAAACGGCCGCAG
CTATAAGGTGTTCAAGGTCATCGGTTGGATGCGGGCGCACCCCGAGCAAACCATAGAAGACTACGACCTTGTTCATACAA
GACGACTGGAGGATATGGTTCGCTTTTGGCGAAACCATCAGAAGACTGATCGGCAGGATTTAATCTTCCAGTGTCATTAC
AGTCTAGTCTGTATTTCGCCTCCTTCCCCTCTTAGGGTCGTGTATGATATTAGTAGTGATGACGAACCTAGTTCGCCTGA
TCTTCCCTTAGAGGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25156.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis