Browse Element(s) Details


Os.5844.1.S1_at

Description gb:AK100641.1
DB_XREF= gi:32985850
TID=Os.5844.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5844 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023110G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023110G15, full insert sequence.
FL= gb:AK100641.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3028011/11Glycosyltransferase QUASIMODO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g30250OsAffx.30097.1.S1_x_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.30097.1.S1_at11/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30250OsAffx.17117.1.S1_x_at1/119+18418804..18421474PA domain containing protein, expressed
LOC_Os09g30260Os.10456.1.S1_at9/119+18426051..18427082expressed protein
LOC_Os09g30270Os.53320.2.S1_x_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.2.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_s_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270Os.53320.1.S1_at11/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30270OsAffx.4931.1.S1_at2/119+18431161..18434040transposon protein, putative, Mutator sub-class, expressed
LOC_Os09g30280Os.5844.1.S1_at11/119+18440085..18444157Glycosyltransferase QUASIMODO1, putative, expressed
LOC_Os09g30290OsAffx.6450.1.S1_at11/119+18444817..18445203hypothetical protein
LOC_Os09g30300NANA9+18447444..18447716expressed protein
LOC_Os09g30310Os.54433.1.A1_at11/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30310OsAffx.30098.1.S1_at1/119+18450611..18451707Nuclear transcription factor Y subunit gamma, putative, expressed
LOC_Os09g30320Os.56088.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320Os.5682.1.S1_at11/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30320OsAffx.30099.1.S1_at4/119+18455855..18457651BURP domain containing protein, expressed
LOC_Os09g30330Os.51728.1.S1_at11/119+18463264..18468033CRAL/TRIO, N-terminus family protein, expressed
LOC_Os09g30340Os.12127.2.S1_x_at7/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed
LOC_Os09g30340Os.12127.1.S1_at6/119+18468726..18469492Photosystem I reaction center subunit V, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016051biological_processcarbohydrate biosynthesis
GO:0045489biological_processpectin biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5844.1.S1_at--1060--131Chr09:18443109..18443133 (25 bp)
ATTACTGACGTCTACCACAATTGGC
LOC_Os09g30280
Os.5844.1.S1_at--612--5391Chr09:18443626..18443650 (25 bp)
GAAGCTAGGTACTCTTCCTGCTGGT
LOC_Os09g30280
Os.5844.1.S1_at--76--10551Chr09:18443682..18443706 (25 bp)
TTCATCACTCCTGGCATCAGTTGGG
LOC_Os09g30280
Os.5844.1.S1_at--1125--7911Chr09:18443798..18443822 (25 bp)
GGATTGTCCAGATATCGCAAATACT
LOC_Os09g30280
Os.5844.1.S1_at--572--7211Chr09:18443834..18443858 (25 bp)
GTCGATTTCGATCAAGTCTTCCTAC
LOC_Os09g30280
Os.5844.1.S1_at--994--7131Chr09:18443849..18443873 (25 bp)
GTCTTCCTACGGGACTGCAATATAA
LOC_Os09g30280
Os.5844.1.S1_at--632--3171Chr09:18443903..18443927 (25 bp)
CAATTATTTTCTTTTCACCTGGTAG
LOC_Os09g30280
Os.5844.1.S1_at--830--6551Chr09:18443927..18443951 (25 bp)
GATTAATTCTTTACGCTCTAGGTTT
LOC_Os09g30280
Os.5844.1.S1_at--14--231Chr09:18443972..18443996 (25 bp)
ATATTCTTTTATCTGGGCTCTTCTC
LOC_Os09g30280
Os.5844.1.S1_at--1021--9551Chr09:18443990..18444014 (25 bp)
TCTTCTCTCTTGTAAAGGTTCCAGC
LOC_Os09g30280
Os.5844.1.S1_at--931--4751Chr09:18444067..18444091 (25 bp)
GCTGCATCACATTTTGTAGTCACTA
LOC_Os09g30280
Target Sequence 
ATTACTGACGTCTACCACAATTGGCAAAGACTGAACGAAAATAGGATATTGTGGAAGCTAGGTACTCTTCCTGCTGGTCT
CGTAACANTTTNNGGAACCGTACCTTNCCCTCNTTCATCACTCCTGGCATCAGTTGGGACTTGGGTACAACCCANAACAT
CNATGAGAAGGATATCCGGAGGGCANTCTGTCATACACTACAATGGTAATCTGAAACCCNTGGCTTGAGATTGGATTGTC
CAGATATCGCAAATACTGGTCAAAATACGTCGATTTCGATCAAGTCTTCCTACGGGACTGCAATATAAATCCCTGAATGA
CAGAGTGTTGTATTATCCAATTATTTTCTTTTCACCTGGTAGATTAATTCTTTACGCTCTAGGTTTTATTTAAGCTGTCT
AGAGCGATATTCTTTTATCTGGGCTCTTCTCTCTTGTAAAGGTTCCAGCAAGTTAGTGGTAGGCTTTAGATCAGAGACAT
GTTCAATCACAGATCACGAAAGCTGCATCACATTTTGTAGTCACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5844.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis