Browse Element(s) Details


Os.5851.1.S1_at

Description gb:AK067649.1
DB_XREF= gi:32977667
TID=Os.5851.1
CNT=41
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.5851 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013114G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013114G08, full insert sequence.
FL= gb:AK067649.1 gb:AY593959.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5740011/115-methylthioribose kinase family protein, expressed
LOC_Os04g574104/115-methylthioribose kinase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57330Os.13987.1.S1_at11/114+33908934..33912073expressed protein
LOC_Os04g57340NANA4+33914656..33915517AP2 domain containing protein, expressed
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0046522molecular_functionS-methyl-5-thioribose kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5851.1.S1_at--938--5612Chr04:33943308..33943332 (25 bp)
GACAAGCCTATTTCATGACAGTCTT
LOC_Os04g57410
Os.5851.1.S1_at--1084--1352Chr04:33942761..33942785 (25 bp)
AGAGCTTCGTGTGAGCGACGTGCCC
LOC_Os04g57410
Os.5851.1.S1_at--402--1652Chr04:33942748..33942772 (25 bp)
AGCGACGTGCCCTTAATTGTGCAAA
LOC_Os04g57410
Os.5851.1.S1_at--460--5372Chr04:33936819..33936843 (25 bp)
GAAGACGCCAGTTTGAAAGCATCGG
LOC_Os04g57400
Os.5851.1.S1_at--1089--6391Chr04:33936766..33936790 (25 bp)
GATCGGGACTGATAATGCCAACCAT
LOC_Os04g57400
Os.5851.1.S1_at--837--3531Chr04:33936744..33936768 (25 bp)
CATCTACACGACCTTTCTGATTGAG
LOC_Os04g57400
Os.5851.1.S1_at--401--2671Chr04:33936691..33936715 (25 bp)
AAGCGATTATCTGTGCCTATTACAA
LOC_Os04g57400
Os.5851.1.S1_at--1137--5191Chr04:33936662..33936686 (25 bp)
GAATTGGCCAGTTATTTGTGCTTTT
LOC_Os04g57400
Os.5851.1.S1_at--1122--7311Chr04:33936613..33936637 (25 bp)
GTGCACTCTGCAAGATCGATGTTTT
LOC_Os04g57400
Os.5851.1.S1_at--391--10352Chr04:33936589..33936613 (25 bp)
TTTTTCACCACTTGGCTAAGCCTTC
LOC_Os04g57400
Os.5851.1.S1_at--226--1551Chr04:33936560..33936584 (25 bp)
AGCTTCCGGGCTTCTTAGTTTATGA
LOC_Os04g57400
Target Sequence 
GACAAGCCTATTTCATGACAGTCTTGGATTTGGTTCAGCAAAAATGATCAGGAGAATTGTTGGAATTGCTCATGTTGAGG
ATTTTGAGTCGATTGAGGATGCCAGCAAGAGAGCTTCGTGTGAGCGACGTGCCCTTAATTGTGCAAAGGCAATCCTGAAG
GGAAGACGCCAGTTTGAAAGCATCGGGCAAGTGATTGTGCATGTACAATCGTTTGATCGGGACTGATAATGCCAACCATC
TACACGACCTTTCTGATTGAGGAGACAAAAGTTTTCATCTGTTTNACCATAAGCGATTATCTGTGCCTATTACAAAGCAG
AATTGGCCAGTTATTTGTGCTTTTAGTACTTTGGATCATGAAAAGTGTGTGCACTCTGCAAGATCGATGTTTTTTTTCAC
CACTTGGCTAAGCCTTCCACCAGCTTCCGGGCTTCTTAGTTTATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5851.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis