Browse Element(s) Details


Os.5917.1.S1_a_at

Description gb:AK119843.1
DB_XREF= gi:37989466
TID=Os.5917.1
CNT=21
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.5917 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023080O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-178-C12, full insert sequence.
FL= gb:AK119843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1732011/11uridine kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17280Os.51013.1.S1_s_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.51013.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17280Os.52125.1.S1_at11/112+9902629..9907868Aph-1 protein, expressed
LOC_Os02g17292Os.50288.2.S1_at11/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17292Os.50288.1.S1_at9/112+9912535..9919767retrotransposon protein, putative, unclassified, expressed
LOC_Os02g17304Os.54023.1.S1_at11/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.25952.1.S1_s_at2/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17304OsAffx.13573.1.S1_at1/112+9922654..9928338NB-ARC domain containing protein, expressed
LOC_Os02g17320Os.5917.1.S1_a_at11/112+9928817..9937359uridine kinase family protein, expressed
LOC_Os02g17330Os.17869.1.S1_at11/112+9950652..9954958Branched-chain-amino-acid aminotransferase-like protein 3, chloroplast precursor, putative, expressed
LOC_Os02g17340OsAffx.2651.2.S1_s_at11/112+9961171..9963169hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0004845molecular_functionuracil phosphoribosyltransferase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5917.1.S1_a_at--959--6511Chr02:9930368..9930392 (25 bp)
GATATTGCAAACAGGCATGTGCTGT
LOC_Os02g17320
Os.5917.1.S1_a_at--78--5011Chr02:9929437..9929461 (25 bp)
GCATGTGGTCAGCAAGAGATTTCCA
LOC_Os02g17320
Os.5917.1.S1_a_at--540--7871Chr02:9929332..9929356 (25 bp)
GGATAGGTACTTTGGGACAGATGAT
LOC_Os02g17320
Os.5917.1.S1_a_at--500--9531Chr02:9929161..9929184 (24 bp)
TCAGGCTTTTGTGAGCATTTAAATA
LOC_Os02g17320
Os.5917.1.S1_a_at--867--2251Chr02:9929141..9929165 (25 bp)
AAATAGACAAAGTCCTGGCGGCGGC
LOC_Os02g17320
Os.5917.1.S1_a_at--108--4691Chr02:9929118..9929142 (25 bp)
GCGGCGGCATCATCTCCATTTTTGA
LOC_Os02g17320
Os.5917.1.S1_a_at--552--8151Chr02:9929073..9929097 (25 bp)
GGAAATTCAGATGCCCATATTGATG
LOC_Os02g17320
Os.5917.1.S1_a_at--509--6271Chr02:9929052..9929076 (25 bp)
GATGTATTCATTACCAGAAACTGTG
LOC_Os02g17320
Os.5917.1.S1_a_at--361--4351Chr02:9929039..9929063 (25 bp)
CCAGAAACTGTGTATCGGTTGAACA
LOC_Os02g17320
Os.5917.1.S1_a_at--266--7911Chr02:9929023..9929047 (25 bp)
GGTTGAACATTACAGGCCGATCTTG
LOC_Os02g17320
Os.5917.1.S1_a_at--477--4511Chr02:9929008..9929032 (25 bp)
GCCGATCTTGCCTAATGACATAAAC
LOC_Os02g17320
Target Sequence 
GATATTGCAAACAGGCATGTGCTGTTGTTGGATCCCATACTGGGAACAGGAAATTCAGCTGTTCAAGCTATATCTCTACT
CTTGAAAAAGGGTGTACAGGAAACAAATATTATTTTTCTGAATCTTATATCAGCTCCCCAAGGAGTGCATGTGGTCAGCA
AGAGATTTCCAAGAGTGAAGATCGTGACATCAGAAATCGAGTTTGGTCTGAATGATGATTTCCGCGTCATCCCTGGGATG
GGTGAGTTTGGGGATAGGTACTTTGGGACAGATGATTATCAGTCATCAACACCATTCTTTTGTGATGAGAAAAATCGTGT
CAGGCTTTTGTGAGCATTTAAATAGACAAAGTCCTGGCGGCGGCGGCGGCATCATCTCCATTTTTGAGAAACTTAAATTT
TACATTTGGAAATTCAGATGCCCATATTGATGTATTCATTACCAGAAACTGTGTATCGGTTGAACATTACAGGCCGATCT
TGCCTAATGACATAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5917.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis