Browse Element(s) Details


Os.5927.1.S1_at

Description gb:AK109338.2
DB_XREF= gi:42821655
TID=Os.5927.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-202-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-202-E01, full insert sequence.
FL= gb:AK109338.2 gb:AK060985.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6354010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g63500Os.21096.1.S1_at10/113+35807631..35814424AFG1-like ATPase family protein, putative, expressed
LOC_Os03g63510Os.24799.1.S1_at11/113+35816478..35821838pentatricopeptide, putative, expressed
LOC_Os03g63520Os.35309.1.A1_at11/113+35822454..35827086Der1-like family protein, expressed
LOC_Os03g63530Os.19270.1.S1_at10/113+35829135..35833105Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os03g63540Os.5927.1.S1_at10/113+35834707..35835736expressed protein
LOC_Os03g63550Os.49114.1.S1_at11/113+35836236..35838324expressed protein
LOC_Os03g63560Os.24660.1.S1_at11/113+35839760..35841999pentatricopeptide, putative, expressed
LOC_Os03g63570OsAffx.3684.1.S1_at10/113+35843343..35844556hypothetical protein
LOC_Os03g63580OsAffx.25809.1.S1_x_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63580OsAffx.25809.1.S1_at11/113+35845714..35847333phosphoesterase family protein, putative, expressed
LOC_Os03g63590Os.9048.1.S1_at11/113+35847566..35850627Cleavage and polyadenylation specificity factor, 73 kDa subunit, putative, expressed
LOC_Os03g63600OsAffx.13593.1.S1_at11/113+35855340..35856869Tetraspanin family protein

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Gene Ontology Classification
GO idTypeName
GO:0005886cellular_componentplasma membrane
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5927.1.S1_at--812--4511Chr03:35835241..35835265 (25 bp)
GCCGCCGAGGAGATAAAGGCCGCCA
LOC_Os03g63540
Os.5927.1.S1_at--1116--5371Chr03:35835086..35835110 (25 bp)
GAAGAAGCGGCAGGCCAACATCCGG
LOC_Os03g63540
Os.5927.1.S1_at--461--3431Chr03:35834968..35834992 (25 bp)
CAGTAGCATCAGCAGTACAACCCCA
LOC_Os03g63540
Os.5927.1.S1_at--206--7031Chr03:35834954..35834978 (25 bp)
GTACAACCCCACCATATACGTTCGT
LOC_Os03g63540
Os.5927.1.S1_at--915--311Chr03:35834939..35834963 (25 bp)
ATACGTTCGTCGTCTCAGTGCAGCA
LOC_Os03g63540
Os.5927.1.S1_at--673--1511Chr03:35834918..35834942 (25 bp)
AGCAGCTCCGCAGATACACAGATTC
LOC_Os03g63540
Os.5927.1.S1_at--267--871Chr03:35834879..35834903 (25 bp)
ATGGCCGCGCTTCAAATTGCTCCTG
LOC_Os03g63540
Os.5927.1.S1_at--789--2231Chr03:35834866..35834890 (25 bp)
AAATTGCTCCTGTGATCCGCGAGAT
LOC_Os03g63540
Os.5927.1.S1_at--567--6371Chr03:35834853..35834877 (25 bp)
GATCCGCGAGATGTTAGATTCTTCA
LOC_Os03g63540
Os.5927.1.S1_at--697--6571Chr03:35834837..35834861 (25 bp)
GATTCTTCATTTCATTCTTGTGTTA
LOC_Os03g63540
Os.5927.1.S1_at--484--1471Chr03:35834704..35834728 (25 bp)
AGAATGATATACTGCTACTCCTAAT
NONE
Target Sequence 
GCCGCCGAGGAGATAAAGGCCGCCACCGCGGGCGACAAGGCGGGGGAGGAGGACGGGGAGACGGAGAGGCACGAGTTGAA
CGGCGGCAAGAAGGCCGGCGTCGTGGTCGGCGCCTTCTCGGCCGCCGCGGTGGTGGGTCTAGCCGCCGTCGTGTGGAAGA
AGCGGCAGGCCAACATCCGGCGGTCCAGGTACGCCGACTACTCCGCCCGCCTCGAGCTCGTCTGATCGTTCGCCGGAGCT
CCTCACCGGAGTAGTACACTACATCTACATCTACAGTAGCATCAGCAGTACAACCCCACCATATACGTTCGTCGTCTCAG
TGCAGCAGCTCCGCAGATACACAGATTCGATGCATGCCTTCCATGGCCGCGCTTCAAATTGCTCCTGTGATCCGCGAGAT
GTTAGATTCTTCATTTCATTCTTGTGTTAATTATTCTTGGTGTTGAAACCATTAAAATTCTTTTTCTGTGAAAAAAAAAA
GAGGAATAACGTAATGGAGTGATATGGAGATGGATACNACNGCAGTTTTGTATACCTAGTAGAATGATATACTGCTACTC
CTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5927.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis