Browse Element(s) Details


Os.5949.1.S1_at

Description gb:AK069901.1
DB_XREF= gi:32979925
TID=Os.5949.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5949 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034C14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034C14, full insert sequence.
FL= gb:AK069901.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0972011/11Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09690Os.23410.1.A1_at11/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09690Os.57159.1.S1_x_at1/117+5149666..5153837galactosyltransferase family protein, putative, expressed
LOC_Os07g09700OsAffx.5269.1.S1_at10/117+5160577..5161802hypothetical protein
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000719biological_processphotoreactive repair
GO:0009411biological_processresponse to UV
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5949.1.S1_at--1--9851Chr07:5178119..5178143 (25 bp)
TACAAGGGCTGGTCGTTTCAGAATT
LOC_Os07g09720
Os.5949.1.S1_at--602--7031Chr07:5178084..5178108 (25 bp)
GTACACTGATCTGCCCAGTAGACAA
LOC_Os07g09720
Os.5949.1.S1_at--109--5291Chr07:5177904..5177928 (25 bp)
GAAGGGTTTGCCAGCCTAATGGGCT
LOC_Os07g09720
Os.5949.1.S1_at--495--6491Chr07:5177755..5177882 (25 bp)
GATATCAAATTACTCTCATGGGCGA
LOC_Os07g09720
Os.5949.1.S1_at--933--791Chr07:5177738..5177762 (25 bp)
ATGGGCGATGTTTCGTGCGGCCATC
LOC_Os07g09720
Os.5949.1.S1_at--793--9131Chr07:5177723..5177747 (25 bp)
TGCGGCCATCTGGTACCGAGGATGT
LOC_Os07g09720
Os.5949.1.S1_at--302--5051Chr07:5177635..5177659 (25 bp)
GCAGCATGTTGAGCGCATTCTTGGA
LOC_Os07g09720
Os.5949.1.S1_at--77--9592Chr08:8402320..8402704 (25 bp)
TCTTGGATAATTTGCCTTCCCTTTT
NONE
Os.5949.1.S1_at--764--7412Chr04:3604050..3604069 (20 bp)
GTGTTCACTTTAGCTCAATTGCCTG
NONE
Os.5949.1.S1_at--248--7031Chr07:5177466..5177490 (25 bp)
GTACATACTGTGTGTAGAGCCATCA
LOC_Os07g09720
Os.5949.1.S1_at--545--6591Chr07:5177412..5177436 (25 bp)
GATTGAGTTCCAACGCTTCTTTTTT
LOC_Os07g09720
Target Sequence 
TACAAGGGCTGGTCGTTTCAGAATTGGTGTGACCTGTACACTGATCTGCCCAGTAGACAATTGAAGGTTAAAGTTCAAGA
TCGAAATTCTATTGTTACAACAGATGCAGAAAGAAGGGTTTGCCAGCCTAATGGGCTGCAGGAACTGATAGATGGGGAGA
TATCAAATTACTCTCATGGGCGATGTTTCGTGCGGCCATCTGGTACCGAGGATGTGGTGCGTGTATATGCAGAGGCATCT
TCAGAGGAAGCAGCTGATNGCCTTGCAAAACGAGTGGCGCAGCATGTTGAGCGCATTCTTGGATAATTTGCCTTCCCTTT
TTTTATCTCTTCATTTTCCAGAAGTTTAAAGTGTTCACTTTAGCTCAATTGCCTGACACATTTGAAGAATATCAAAATCC
ATTTGTTTGTAATGCAACACTACATGTTTATTCGAAATTTTCAGATTGTACATACTGTGTGTAGAGCCATCAGTTATTGT
ACCAAAAAAATAGTATGAACAGATTGAGTTCCAACGCTTCTTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis