Browse Element(s) Details


OsAffx.5272.1.S1_at

Description tigr:9635.m00939
TID=OsAffx.5272.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0975010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5272.1.S1_at--86--10191Chr07:5192809..5192833 (25 bp)
TATTTAGTTCATCACCAGCGGTTTT
LOC_Os07g09750
OsAffx.5272.1.S1_at--653--9791Chr07:5192760..5192784 (25 bp)
TAACCGATTATGAGACCCGTGCCTG
LOC_Os07g09750
OsAffx.5272.1.S1_at--1135--6731Chr07:5192705..5192729 (25 bp)
GTTCATCCCTGTTCTTGAGTACGAT
LOC_Os07g09750
OsAffx.5272.1.S1_at--593--7971Chr07:5192632..5192656 (25 bp)
GGATCGACAGGACTACTGCTCATAT
LOC_Os07g09750
OsAffx.5272.1.S1_at--723--6611NONE
GTTGGCATCCCAATATCCACAGGAT
NONE
OsAffx.5272.1.S1_at--953--5591Chr07:5191461..5191485 (25 bp)
GAAATTCGTTTCAGAGCTGTCCAAT
LOC_Os07g09750
OsAffx.5272.1.S1_at--1064--831Chr07:5191091..5191462 (25 bp)
ATGGACATCCATAGCTCATCTGGAC
LOC_Os07g09750
OsAffx.5272.1.S1_at--277--271Chr07:5191012..5191036 (25 bp)
ATATGTGGGCTGTCGTATTTTCTGA
LOC_Os07g09750
OsAffx.5272.1.S1_at--604--10151Chr07:5190925..5190949 (25 bp)
TATCTCATTGATCTGCCACACCGGA
LOC_Os07g09750
OsAffx.5272.1.S1_at--457--2151Chr07:5190868..5190932 (25 bp)
ACACCGGACAGACATCAGACTTTCA
LOC_Os07g09750
OsAffx.5272.1.S1_at--958--10171Chr07:5190838..5190862 (25 bp)
TATACTAGACTACTGCTGGTGCTGG
LOC_Os07g09750
Target Sequence 
TATTTAGTTCATCACCAGCGGTTTTGTTCAACCATGGACCTATGGTTTCTAACCGATTATGAGACCCGTGCCTGGGTTAA
AGAATATAGCATTCAGACTGAATCGTTCATCCCTGTTCTTGAGTACGATGTAAAGCCATTGCTGGTATTAGATGATGGGA
GGATACTCATATGGTTAGGATCGACAGGACTACTGCTCATATATGATCCAAGAACCAGCAGTTTTGCGGAAGTCAAGATG
AGACATCTTGCTGAAGTTGGCATCCCAATATCCACAGGATACTTCAGATACCTTGAAATTCGTTTCAGAGCTGTCCAATG
GACATCCATAGCTCATCTGGACAATCTGATATTCTACGAATTCAGAAAAATTGCAGCAGAGTTTGCAATCAAGGATATAT
GTGGGCTGTCGTATTTTCTGAGCATTGAAGCAAATAAGCTATCTGGTGATGAACTGATGCTGGCACAAATAAATGAAAAG
AGGTATCTCATTGATCTGCCACACCGGACAGACATCAGACTTTCAGAAGCTATACTAGACTACTGCTGGTGCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5272.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis