Browse Element(s) Details


Os.53087.1.S1_at

Description gb:AK070765.1
DB_XREF= gi:32980788
TID=Os.53087.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53087 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023071P20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023071P20, full insert sequence.
FL= gb:AK070765.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0980010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53087.1.S1_at--1021--2651Chr07:5214882..5214906 (25 bp)
AAGCCGGCGCACAGGAAAGGTCTCG
LOC_Os07g09800
Os.53087.1.S1_at--25--9271NONE
TCCTCCCCGGGATGGTGGTACTCGT
NONE
Os.53087.1.S1_at--1088--2451Chr07:5214774..5214798 (25 bp)
AACAACGCCTACCACATGTACTGCG
LOC_Os07g09800
Os.53087.1.S1_at--724--751Chr07:5214759..5214783 (25 bp)
ATGTACTGCGGCATCGTGCAGCGCG
LOC_Os07g09800
Os.53087.1.S1_at--60--7671Chr07:5214699..5214723 (25 bp)
GGGATCTGGGACAGGCTCATCACCT
LOC_Os07g09800
Os.53087.1.S1_at--511--391Chr07:5214681..5214705 (25 bp)
ATCACCTTCGATCTCGACGAGCTCG
LOC_Os07g09800
Os.53087.1.S1_at--569--3491Chr07:5214634..5214658 (25 bp)
CATGGTGAACCCTAAGTCCGTGCTG
LOC_Os07g09800
Os.53087.1.S1_at--707--2611Chr07:5214627..5214651 (25 bp)
AACCCTAAGTCCGTGCTGCTCGAGT
LOC_Os07g09800
Os.53087.1.S1_at--26--10771Chr07:5214508..5214532 (25 bp)
TTGACCACCATTGCTGCTTCTGCTT
LOC_Os07g09800
Os.53087.1.S1_at--1151--51Chr07:5214366..5214390 (25 bp)
ATTGCTATATGTACAGTTGGAATCT
LOC_Os07g09800
Os.53087.1.S1_at--904--8111Chr07:5214330..5214354 (25 bp)
GGCACTATGAAACAAACGATTCGGA
LOC_Os07g09800
Target Sequence 
AAGCCGGCGCACAGGAAAGGTCTCGCCGCCGCCGCCACGGTGGAGCGGCCGAGGGCGCCGGAGCTGCCGCTGTTCCTCCC
CGGGATGGTGGTACTCGTCAAGAACCCCAACAACGCCTACCACATGTACTGCGGCATCGTGCAGCGCGTCACCGACGGCA
AGGTCGGGGTGCTGTTCGAGGGGGGGATCTGGGACAGGCTCATCACCTTCGATCTCGACGAGCTCGAGGGGAGGGAGAAG
GGCCCGCCCATGGTGAACCCTAAGTCCGTGCTGCTCGAGTCCCTCGCCGCGGAGATGGAGGACGATGTGGCCAAGGAGGA
GGAGGGAGAGGAGGCCAAGAAGAAGAAGGAGGAGGAAGGCACCGCCGCCGCGGCTTGACCACCATTGCTGCTTCTGCTTC
TTCTTGTATGTATACAGCTATCTATATTTTCTTAGATGATGGAAGTGAAAGGGGTATATATATATATATTATCTATTCGA
TGAGTAATTTCGAAGTGAGTAAATGTGTTGTTGTTAATTGCTATATGTACAGTTGGAATCTTAGTGTGAATTGGCACTAT
GAAACAAACGATTCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53087.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis