Browse Element(s) Details


OsAffx.16180.1.S1_at

Description tigr:9635.m00949
TID=OsAffx.16180.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0985011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16180.1.S1_at--721--1551Chr07:5237367..5237391 (25 bp)
AGCTTAGTTTGCTTCGCACGATATT
LOC_Os07g09850
OsAffx.16180.1.S1_at--374--1891Chr07:5237350..5237374 (25 bp)
ACGATATTACAACGGTGTCCCTCCT
LOC_Os07g09850
OsAffx.16180.1.S1_at--467--6171Chr07:5237052..5237076 (25 bp)
GAGGATCACCCGTTTGAACTTCATT
LOC_Os07g09850
OsAffx.16180.1.S1_at--78--3011Chr07:5237013..5237037 (25 bp)
AATGAGCTGGTATCTGGCCCGGTGC
LOC_Os07g09850
OsAffx.16180.1.S1_at--556--5991Chr07:5236967..5236991 (25 bp)
GAGACTACAATCCATGGACTCGTGA
LOC_Os07g09850
OsAffx.16180.1.S1_at--819--10571Chr07:5236916..5236940 (25 bp)
TTCTAGCAGTTTGCAAAGCCCGCTT
LOC_Os07g09850
OsAffx.16180.1.S1_at--934--2351Chr07:5236902..5236926 (25 bp)
AAAGCCCGCTTATATGATCCTCCAA
LOC_Os07g09850
OsAffx.16180.1.S1_at--278--4751Chr07:5236845..5236869 (25 bp)
GCTGATACATGTTGGTGTGTCCCTG
LOC_Os07g09850
OsAffx.16180.1.S1_at--1104--2131Chr07:5235667..5235691 (25 bp)
ACAGAATTCTGCATCCAACCATGGA
LOC_Os07g09850
OsAffx.16180.1.S1_at--566--991Chr07:5235526..5235550 (25 bp)
AGGATGGTGCCATCTACCGGGACTG
LOC_Os07g09850
OsAffx.16180.1.S1_at--5--1791Chr07:5235511..5235535 (25 bp)
ACCGGGACTGCTGTCCTGATAGTGA
LOC_Os07g09850
Target Sequence 
AGCTTAGTTTGCTTCGCACGATATTACAACGGTGTCCCTCCTCTACTGGCAAGCTGCACCAACAACAGGATGTAGCATGT
AGAAAGGAGGATCACCCGTTTGAACTTCATTTCATCTGTGGTGTCAATGAGCTGGTATCTGGCCCGGTGCGCAGCTTGGG
TGAGAAAGTTGGAGACTACAATCCATGGACTCGTGACAAATATTATCACACCCATATCAACTTTCTAGCAGTTTGCAAAG
CCCGCTTATATGATCCTCCAACACTCTTCTTTGCTGAATGTGGCAAAGATGGTGCTGATACATGTTGGTGTGTCCCTGTG
ATTCCACAGAAACCAGAAGCTGGACAAGTTCGTTGTATTTATTGTGAGTATCAAGGGAACAGAATTCTGCATCCAACCAT
GGAGAGTTTCCATGGGCGTGATGAGTTCGAGAAGTTATTCTATGGATCAAACGGTTCTTACACCAATGATAAGCTCATCA
CAAATAGCGATTTAGAGGTAGATTGGGTACATGGCGTGCAGGATGGTGCCATCTACCGGGACTGCTGTCCTGATAGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis