Browse Element(s) Details


OsAffx.28371.1.S1_at

Description tigr:9635.m00954
TID=OsAffx.28371.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0990011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09920OsAffx.16182.1.S1_at11/117+5279463..5282008disease resistance protein RPM1 homolog, putative
LOC_Os07g09930Os.43567.1.S1_x_at8/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.29987.1.S1_at5/117+5284091..5284950transposon protein, putative, unclassified
LOC_Os07g09930Os.38172.1.S1_x_at2/117+5284091..5284950transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28371.1.S1_at--631--5311Chr07:5262277..5262301 (25 bp)
GAAGGTGCTCCCAGAACCTCTGTAA
LOC_Os07g09900
OsAffx.28371.1.S1_at--286--3751Chr07:5262176..5262200 (25 bp)
CTCCGGGTACTCTACATCGGTGGTA
LOC_Os07g09900
OsAffx.28371.1.S1_at--316--7851Chr07:5262155..5262179 (25 bp)
GGTACCATCGATAGAACTCCAGACT
LOC_Os07g09900
OsAffx.28371.1.S1_at--715--7331Chr07:5262128..5262152 (25 bp)
GTGCAGTCACTTACTCAACTTGTTG
LOC_Os07g09900
OsAffx.28371.1.S1_at--156--10231Chr07:5262094..5262118 (25 bp)
TTTGGTGGACAAACCTTCCTAGTGA
LOC_Os07g09900
OsAffx.28371.1.S1_at--510--4771Chr07:5262045..5262069 (25 bp)
GCTGCCTAACCTGTCAAAGATCATC
LOC_Os07g09900
OsAffx.28371.1.S1_at--465--9711Chr07:5261971..5261995 (25 bp)
TCAAGTTCCCGCAGCTCAAAGAGTT
LOC_Os07g09900
OsAffx.28371.1.S1_at--31--8871Chr07:5261931..5261955 (25 bp)
TGACGGTAAGCCACGAGTTTTCGGA
LOC_Os07g09900
OsAffx.28371.1.S1_at--904--711Chr07:5261846..5261870 (25 bp)
ATGATTCTTGATGGTGTCCAACACC
LOC_Os07g09900
OsAffx.28371.1.S1_at--955--9131Chr07:5261803..5261827 (25 bp)
TGCGGCTCCGTGGTTGGAAGCATAA
LOC_Os07g09900
OsAffx.28371.1.S1_at--1121--9591Chr07:5261742..5261766 (25 bp)
TCATAGCATGAGTCGCCATAGGTCA
LOC_Os07g09900
Target Sequence 
GAAGGTGCTCCCAGAACCTCTGTAAGTTGTTTCTTGAAGACATGCATTTCAACGCAAATAACATGAATTTTCTCCTCGAG
CTCCCCTCGCCACCAAAGTTCCTCCGGGTACTCTACATCGGTGGTACCATCGATAGAACTCCAGACTGGGTGCAGTCACT
TACTCAACTTGTTGAGATTGTGTTTTGGTGGACAAACCTTCCTAGTGACGAGATATATGGTGTCCTGTACAAGCTGCCTA
ACCTGTCAAAGATCATCTTGGGCAAGAGATGCTGCAGCGAAGACAAGCTGGTGGCTAGCGGCGCCTTCAAGTTCCCGCAG
CTCAAAGAGTTGATCTTAGGTCCTAATGACGGTAAGCCACGAGTTTTCGGATTTGAGGAAGGAGCCATGCCAAAGCTCAA
GACCCTAGAAATGAATTTCCATAAGGAGGATATGATTCTTGATGGTGTCCAACACCTTACGAGCCTCAAGGAGGTGCGGC
TCCGTGGTTGGAAGCATAACAGTGCACTGCATAGGGCAGTGGACCAGCTGAAGGCTCATAGCATGAGTCGCCATAGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28371.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis