Browse Element(s) Details


Os.14649.1.S1_at

Description gb:AK069093.1
DB_XREF= gi:32979117
TID=Os.14649.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14649 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023008B20, full insert sequence.
FL= gb:AK069093.1 gb:AK073823.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0987011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09880OsAffx.28370.2.S1_at11/117+5250783..5252434expressed protein
LOC_Os07g09880OsAffx.28370.1.S1_x_at1/117+5250783..5252434expressed protein
LOC_Os07g09890Os.3294.1.S1_at11/117+5254686..5258064Hexokinase 1, putative, expressed
LOC_Os07g09900OsAffx.28371.1.S1_at11/117+5261709..5265610NB-ARC domain containing protein
LOC_Os07g09910OsAffx.16181.1.S1_at11/117+5270787..5271719stripe rust resistance protein Yr10, putative
LOC_Os07g09910OsAffx.15202.1.S1_at1/117+5270787..5271719stripe rust resistance protein Yr10, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14649.1.S1_at--844--1171Chr07:5247802..5247826 (25 bp)
AGTACTCTCGATGCAGATGGGATCA
LOC_Os07g09870
Os.14649.1.S1_at--805--7051Chr07:5247854..5247878 (25 bp)
GTAACTGACACTTCCTCGGATATAA
LOC_Os07g09870
Os.14649.1.S1_at--1107--1071Chr07:5249026..5249050 (25 bp)
AGGGCATTGTACGAGGTGCTACCAC
LOC_Os07g09870
Os.14649.1.S1_at--1113--2671Chr07:5249052..5249076 (25 bp)
AAGCTGGGCACTTAGGATCTCTACT
LOC_Os07g09870
Os.14649.1.S1_at--112--3651Chr07:5249171..5249195 (25 bp)
CTTCGTCATGTCTCTGAATCTCTGA
LOC_Os07g09870
Os.14649.1.S1_at--683--5251Chr07:5249186..5249210 (25 bp)
GAATCTCTGATCGATCGCGTTATTG
LOC_Os07g09870
Os.14649.1.S1_at--409--4151Chr07:5249201..5249225 (25 bp)
CGCGTTATTGCGATATGTTCTGTAA
LOC_Os07g09870
Os.14649.1.S1_at--958--4951Chr07:5249250..5249274 (25 bp)
GCATATGCCGTTAGCTCGAGTTTGA
LOC_Os07g09870
Os.14649.1.S1_at--121--9111Chr07:5249284..5249308 (25 bp)
TGCTCCTGTCTCGAGTTTTACCTGA
LOC_Os07g09870
Os.14649.1.S1_at--909--10371Chr07:5249299..5249323 (25 bp)
TTTTACCTGATGCAACGACTTTATG
LOC_Os07g09870
Os.14649.1.S1_at--5--9731Chr07:5249342..5249366 (25 bp)
TAATGCTCGTCAACGTAAGTTTCGT
LOC_Os07g09870
Target Sequence 
AGTACTCTCGATGCAGATGGGATCAAAAGGGGTTGTGCAGATTTATGATCCNGTAACTGACACTTCCTCGGATATAATTC
AGATTAGTATCTACACTGGAGCAAGTGTGTTCACTGGAAGTTTATTATGTCCNACNAGAGTGTGTGACAAGGTTGGCAGG
GCATTGTACGAGGTGCTACCACNAAAGCTGGGCACTTAGGATCTCTACTGCTCTGATGATGTTTCGGTTTGGTGTCATCA
AGGTGTAGCTGATGNTCCCTCGAAAATGTAACANAAAAAAATGGTGTAGCTGATATTTGCTGTGNTCTTCGTCATGTCTC
TGAATCTCTGATCGATCGCGTTATTGCGATATGTTCTGTAATCATATCAACAATTCTGGAGTTAAGCATATGCCGTTAGC
TCGAGTTTGAGGGATCGTNGTGCTCCTGTCTCGAGTTTTACCTGATGCAACGACTTTATGCAAATAGTAGGATGAAATTA
ATGCTCGTCAACGTAAGTTTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14649.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis