Browse Element(s) Details


Os.54048.1.S1_at

Description gb:AK101511.1
DB_XREF= gi:32986720
TID=Os.54048.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046A10, full insert sequence.
FL= gb:AK101511.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0981410/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein
LOC_Os07g09814OsAffx.5273.1.S1_s_at11/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54048.1.S1_at10/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.46610.1.S1_x_at7/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.54151.1.S1_x_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.5273.1.S1_at4/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.45173.1.S1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.48015.1.A1_x_at2/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.38764.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.22452.1.S1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814Os.47999.2.A1_x_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09814OsAffx.20877.1.S1_at1/117+5217738..5225021F-box domain containing protein, expressed
LOC_Os07g09830OsAffx.5275.1.S1_s_at11/117+5227156..5229276No apical meristem protein
LOC_Os07g09840NANA7+5231227..5232429expressed protein
LOC_Os07g09850OsAffx.16180.1.S1_at11/117+5235477..5238911hypothetical protein
LOC_Os07g09860OsAffx.5275.1.S1_s_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09860OsAffx.5275.2.S1_at11/117+5242938..5244974No apical meristem protein
LOC_Os07g09870Os.14649.1.S1_at11/117+5246639..5249371F-box domain containing protein, expressed
LOC_Os07g09870Os.36460.2.S1_x_at1/117+5246639..5249371F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54048.1.S1_at--562--5951Chr07:5218928..5218952 (25 bp)
GAGCAAGGACTCTGGGTTAAGAAGT
LOC_Os07g09814
Os.54048.1.S1_at--686--5331Chr07:5218948..5218972 (25 bp)
GAAGTACAGCATAGATTTCGAATAC
LOC_Os07g09814
Os.54048.1.S1_at--873--2451Chr07:5218979..5219003 (25 bp)
AACAATGCTTATCCTTTGCTGCTGT
LOC_Os07g09814
Os.54048.1.S1_at--323--10151Chr07:5218988..5219012 (25 bp)
TATCCTTTGCTGCTGTTAGACGATG
LOC_Os07g09814
Os.54048.1.S1_at--502--4771Chr07:5218996..5219020 (25 bp)
GCTGCTGTTAGACGATGAGAAGATT
LOC_Os07g09814
Os.54048.1.S1_at--521--7991Chr07:5219068..5219092 (25 bp)
GGATGACACATACACTGATATATTG
LOC_Os07g09814
Os.54048.1.S1_at--590--231Chr07:5219085..5219109 (25 bp)
ATATATTGGTGGTGCCAGATTTCAG
LOC_Os07g09814
Os.54048.1.S1_at--166--8291Chr07:5219117..5219141 (25 bp)
GGCATTTATACTGGAGATCTATTGA
LOC_Os07g09814
Os.54048.1.S1_at--214--451Chr07:5219133..5219157 (25 bp)
ATCTATTGAGCTTGGAGGGTGGTCT
LOC_Os07g09814
Os.54048.1.S1_at--769--3611Chr07:5219143..5219167 (25 bp)
CTTGGAGGGTGGTCTGAACTGATTA
LOC_Os07g09814
Os.54048.1.S1_at--91--2571NONE
AACTGATTATGTAGACCATTGCGCC
NONE
Target Sequence 
GAGCAAGGACTCTGGGTTAAGAAGTACAGCATAGATTTCGAATACTATAATAACAATGCTTATCCTTTGCTGCTGTTAGA
CGATGAGAAGATTGTCTTCCTACTGNGGGGAACTAATGTTCTACAAAGTTATGATCTAAAGGATGACACATACACTGATA
TATTGGTGGTGCCAGATTTCAGATCCGTNGGCATTTATACTGGAGATCTATTGAGCTTGGAGGGTGGTCTGAACTGATTA
TGTAGACCATTGCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54048.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis